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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056271 ID=TCONS_00056271|Name=TCONS_00056271|organism=Clytia hemisphaerica|type=transcript|length=2021bp
CTACCGCCGAATTGACATTAAAAGACAACCTTACTAATAACCTCATGTGT
ATCGATTCCGCAAGTACTCCAGTGAATAATATAATAAATAAAGGTGATAG
CCGAGATCATTCGACAGAATGGAAGACAACCGAGTTTGTTTTCCCACCAA
AGGCGCTAAAAGGTATAAAAATATCTACACAAAACAGGCTCATTGAGGAC
TTTCAATACCTTATAGAGGGAGAAAGTTCTGAAGACAGTATGCTCATAAT
CATCCCTCAAATAGTCTCCTGTGAGAAAGGTGAGTTAGAAATCTTCGTTG
CAAACCCCCTCAAAGAAGAAGTCGGAGCCTTACTCTCAATAGTAGCCACC
CCCATAACAACAGTTGAAGAACCAAAATTCGCACCAAAAGAAAAATGCTA
TAAACCCTACCCATTGTCACCAGATGAAAAGGAAGAATTAGACAAGCTCT
TAGATGAATTCAAGGATGTTTTGGCAGACAAAACAGACCCTTTAGGTCAC
ACTGATAGGGTAGAACATGAGATTATCACGGAACATGACCAACCCATACG
ACAAAAGTGTTACAGGCTATCCCCAGCCCAAAAAGAGactcttgaaaaag
aaatagaacACCAACTAGAGAAAAAGATTATAAGAAGGTCAAATTCCCCA
TATAGCCACCCAGTCGTGTTGGTACCAAAACCTTGTGGAGGTACTAGAGT
ATGTATAGATTACAGAAAACTCAACAAAATTACTGTAAAAGATGCTCACC
CATTACCCAAGATAGAAGAAATCTTAGATCATCTTAACGGTGCAAAGATA
TTCTCCACCATCGACCTCTTGATGGGCTATCATCAGATACCAATGAAGCC
AGAAAGCATTCCAAAAACAGCCTTTGTGACACACAAAGGACTGTTCGAGT
ATGTAATGATGCACATGGGCCTCTGCAATAGTGCGGCTAGCTTTGAGAGG
CTAGCGGAACAAGTCTTCGCACTTGAACTATGGATATTCCTTTTGTTCTA
TATTGATGACCTCATCATCTATTCTAAAACTCCGGAGGAACACTTACAAC
AACTTCGAGTGGTGCTGACAAGGTTAAGGGAAAACAAATTGCAAGCCAAG
CTAAGCAAATGCCGTTTTGCGATGGCGCAACTGACATTTCTTGGACACAC
AGTGAATGCAGAAGGAATATTACCACAAGACACCAACACTACTACGATAA
AAAGCTTCCAGTATCCCAAAAGTCAAAAGGAGTTACGGTCCTTTCTCGGA
ATGTGCTCTTACTACAGGAAATTTATTCCGAATTACGGAAAGATTGCAAG
ATCCTTGAATACTCTTCTAAAAAAAGACGCTAAGTTTCAGTTAACTGAAG
AGATGAAAATGGATTTTGACACCCTCAAAGAGAAACTTGTTTCTCCCCCG
TTGTTGCATTATCCTGATTATGAGAGGATCTTCATAGTAGTAACCGATGC
TTCTAAATATGCGATAGGGCACATCATCGCACAAGAAGTCTCTGGAAGAT
TTGTCCCGATCAAATATGGTGGAAGGACCCTCAAGGCGGCTGAAATAAAT
TACACAATCAGCGAAAAGGAAGCTTTGGCACTCGTACATGCGATCCAAAA
GAACCACCAATACTTATATGGCCGAGCTTTCGTTGTATATACTGATCATC
AACCCCTAAAGAATATGGTCAACGCCCATGATCCGACCGGACGTTTGAGT
TGATGGTATCTGACTCTACAACAATACGAGTATGTTGTCCGATATTTACC
TGGTAAACAAAACGTCGTAGCAGACGCTATAAGCCGGTTAAATACCATAC
AGCCAGatattgatgaaaatgaaatccCTCGAGTGAACTTAGTAGATCAT
GACCGACCCCAACCTGTAGCTTGTGTCATTGTTCCTAGTGCTGAGATCAT
CACAGAACAAGACAAGGACCctgaaattagaaaaataaaagaagaattga
GGACTTCTGATACGACACCTCTTCAAGACAAGTTCGTGGTTGACCAAGAC
ACCCTATATAGAATAAGCCCA Run BLAST on NCBI protein sequence of TCONS_00056271-protein >TCONS_00056271-protein ID=TCONS_00056271-protein|Name=TCONS_00056271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=566bp
TAELTLKDNLTNNLMCIDSASTPVNNIINKGDSRDHSTEWKTTEFVFPPK
ALKGIKISTQNRLIEDFQYLIEGESSEDSMLIIIPQIVSCEKGELEIFVA
NPLKEEVGALLSIVATPITTVEEPKFAPKEKCYKPYPLSPDEKEELDKLL
DEFKDVLADKTDPLGHTDRVEHEIITEHDQPIRQKCYRLSPAQKETLEKE
IEHQLEKKIIRRSNSPYSHPVVLVPKPCGGTRVCIDYRKLNKITVKDAHP
LPKIEEILDHLNGAKIFSTIDLLMGYHQIPMKPESIPKTAFVTHKGLFEY
VMMHMGLCNSAASFERLAEQVFALELWIFLLFYIDDLIIYSKTPEEHLQQ
LRVVLTRLRENKLQAKLSKCRFAMAQLTFLGHTVNAEGILPQDTNTTTIK
SFQYPKSQKELRSFLGMCSYYRKFIPNYGKIARSLNTLLKKDAKFQLTEE
MKMDFDTLKEKLVSPPLLHYPDYERIFIVVTDASKYAIGHIIAQEVSGRF
VPIKYGGRTLKAAEINYTISEKEALALVHAIQKNHQYLYGRAFVVYTDHQ
PLKNMVNAHDPTGRLS Run BLAST on NCBI transcript from alignment at scaffold_27:62020..64040 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056271 ID=TCONS_00056271|Name=TCONS_00056271|organism=Clytia hemisphaerica|type=transcript|length=2021bp|location=Sequence derived from alignment at scaffold_27:62020..64040 (Clytia hemisphaerica)
TGGGCTTATTCTATATAGGGTGTCTTGGTCAACCACGAACTTGTCTTGAA
GAGGTGTCGTATCAGAAGTCCtcaattcttcttttatttttctaatttca
gGGTCCTTGTCTTGTTCTGTGATGATCTCAGCACTAGGAACAATGACACA
AGCTACAGGTTGGGGTCGGTCATGATCTACTAAGTTCACTCGAGggattt
cattttcatcaatatCTGGCTGTATGGTATTTAACCGGCTTATAGCGTCT
GCTACGACGTTTTGTTTACCAGGTAAATATCGGACAACATACTCGTATTG
TTGTAGAGTCAGATACCATCAACTCAAACGTCCGGTCGGATCATGGGCGT
TGACCATATTCTTTAGGGGTTGATGATCAGTATATACAACGAAAGCTCGG
CCATATAAGTATTGGTGGTTCTTTTGGATCGCATGTACGAGTGCCAAAGC
TTCCTTTTCGCTGATTGTGTAATTTATTTCAGCCGCCTTGAGGGTCCTTC
CACCATATTTGATCGGGACAAATCTTCCAGAGACTTCTTGTGCGATGATG
TGCCCTATCGCATATTTAGAAGCATCGGTTACTACTATGAAGATCCTCTC
ATAATCAGGATAATGCAACAACGGGGGAGAAACAAGTTTCTCTTTGAGGG
TGTCAAAATCCATTTTCATCTCTTCAGTTAACTGAAACTTAGCGTCTTTT
TTTAGAAGAGTATTCAAGGATCTTGCAATCTTTCCGTAATTCGGAATAAA
TTTCCTGTAGTAAGAGCACATTCCGAGAAAGGACCGTAACTCCTTTTGAC
TTTTGGGATACTGGAAGCTTTTTATCGTAGTAGTGTTGGTGTCTTGTGGT
AATATTCCTTCTGCATTCACTGTGTGTCCAAGAAATGTCAGTTGCGCCAT
CGCAAAACGGCATTTGCTTAGCTTGGCTTGCAATTTGTTTTCCCTTAACC
TTGTCAGCACCACTCGAAGTTGTTGTAAGTGTTCCTCCGGAGTTTTAGAA
TAGATGATGAGGTCATCAATATAGAACAAAAGGAATATCCATAGTTCAAG
TGCGAAGACTTGTTCCGCTAGCCTCTCAAAGCTAGCCGCACTATTGCAGA
GGCCCATGTGCATCATTACATACTCGAACAGTCCTTTGTGTGTCACAAAG
GCTGTTTTTGGAATGCTTTCTGGCTTCATTGGTATCTGATGATAGCCCAT
CAAGAGGTCGATGGTGGAGAATATCTTTGCACCGTTAAGATGATCTAAGA
TTTCTTCTATCTTGGGTAATGGGTGAGCATCTTTTACAGTAATTTTGTTG
AGTTTTCTGTAATCTATACATACTCTAGTACCTCCACAAGGTTTTGGTAC
CAACACGACTGGGTGGCTATATGGGGAATTTGACCTTCTTATAATCTTTT
TCTCTAGTTGGTgttctatttctttttcaagagtCTCTTTTTGGGCTGGG
GATAGCCTGTAACACTTTTGTCGTATGGGTTGGTCATGTTCCGTGATAAT
CTCATGTTCTACCCTATCAGTGTGACCTAAAGGGTCTGTTTTGTCTGCCA
AAACATCCTTGAATTCATCTAAGAGCTTGTCTAATTCTTCCTTTTCATCT
GGTGACAATGGGTAGGGTTTATAGCATTTTTCTTTTGGTGCGAATTTTGG
TTCTTCAACTGTTGTTATGGGGGTGGCTACTATTGAGAGTAAGGCTCCGA
CTTCTTCTTTGAGGGGGTTTGCAACGAAGATTTCTAACTCACCTTTCTCA
CAGGAGACTATTTGAGGGATGATTATGAGCATACTGTCTTCAGAACTTTC
TCCCTCTATAAGGTATTGAAAGTCCTCAATGAGCCTGTTTTGTGTAGATA
TTTTTATACCTTTTAGCGCCTTTGGTGGGAAAACAAACTCGGTTGTCTTC
CATTCTGTCGAATGATCTCGGCTATCACCTTTATTTATTATATTATTCAC
TGGAGTACTTGCGGAATCGATACACATGAGGTTATTAGTAAGGTTGTCTT
TTAATGTCAATTCGGCGGTAG Coding sequence (CDS) from alignment at scaffold_27:62020..64040 >TCONS_00056271 ID=TCONS_00056271|Name=TCONS_00056271|organism=Clytia hemisphaerica|type=CDS|length=1701bp|location=Sequence derived from alignment at scaffold_27:62020..64040 (Clytia hemisphaerica)
TCAACTCAAACGTCCGGTCGGATCATGGGCGTTGACCATATTCTTTAGGG
GTTGATGATCAGTATATACAACGAAAGCTCGGCCATATAAGTATTGGTGG
TTCTTTTGGATCGCATGTACGAGTGCCAAAGCTTCCTTTTCGCTGATTGT
GTAATTTATTTCAGCCGCCTTGAGGGTCCTTCCACCATATTTGATCGGGA
CAAATCTTCCAGAGACTTCTTGTGCGATGATGTGCCCTATCGCATATTTA
GAAGCATCGGTTACTACTATGAAGATCCTCTCATAATCAGGATAATGCAA
CAACGGGGGAGAAACAAGTTTCTCTTTGAGGGTGTCAAAATCCATTTTCA
TCTCTTCAGTTAACTGAAACTTAGCGTCTTTTTTTAGAAGAGTATTCAAG
GATCTTGCAATCTTTCCGTAATTCGGAATAAATTTCCTGTAGTAAGAGCA
CATTCCGAGAAAGGACCGTAACTCCTTTTGACTTTTGGGATACTGGAAGC
TTTTTATCGTAGTAGTGTTGGTGTCTTGTGGTAATATTCCTTCTGCATTC
ACTGTGTGTCCAAGAAATGTCAGTTGCGCCATCGCAAAACGGCATTTGCT
TAGCTTGGCTTGCAATTTGTTTTCCCTTAACCTTGTCAGCACCACTCGAA
GTTGTTGTAAGTGTTCCTCCGGAGTTTTAGAATAGATGATGAGGTCATCA
ATATAGAACAAAAGGAATATCCATAGTTCAAGTGCGAAGACTTGTTCCGC
TAGCCTCTCAAAGCTAGCCGCACTATTGCAGAGGCCCATGTGCATCATTA
CATACTCGAACAGTCCTTTGTGTGTCACAAAGGCTGTTTTTGGAATGCTT
TCTGGCTTCATTGGTATCTGATGATAGCCCATCAAGAGGTCGATGGTGGA
GAATATCTTTGCACCGTTAAGATGATCTAAGATTTCTTCTATCTTGGGTA
ATGGGTGAGCATCTTTTACAGTAATTTTGTTGAGTTTTCTGTAATCTATA
CATACTCTAGTACCTCCACAAGGTTTTGGTACCAACACGACTGGGTGGCT
ATATGGGGAATTTGACCTTCTTATAATCTTTTTCTCTAGTTGGTgttcta
tttctttttcaagagtCTCTTTTTGGGCTGGGGATAGCCTGTAACACTTT
TGTCGTATGGGTTGGTCATGTTCCGTGATAATCTCATGTTCTACCCTATC
AGTGTGACCTAAAGGGTCTGTTTTGTCTGCCAAAACATCCTTGAATTCAT
CTAAGAGCTTGTCTAATTCTTCCTTTTCATCTGGTGACAATGGGTAGGGT
TTATAGCATTTTTCTTTTGGTGCGAATTTTGGTTCTTCAACTGTTGTTAT
GGGGGTGGCTACTATTGAGAGTAAGGCTCCGACTTCTTCTTTGAGGGGGT
TTGCAACGAAGATTTCTAACTCACCTTTCTCACAGGAGACTATTTGAGGG
ATGATTATGAGCATACTGTCTTCAGAACTTTCTCCCTCTATAAGGTATTG
AAAGTCCTCAATGAGCCTGTTTTGTGTAGATATTTTTATACCTTTTAGCG
CCTTTGGTGGGAAAACAAACTCGGTTGTCTTCCATTCTGTCGAATGATCT
CGGCTATCACCTTTATTTATTATATTATTCACTGGAGTACTTGCGGAATC
GATACACATGAGGTTATTAGTAAGGTTGTCTTTTAATGTCAATTCGGCGG
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056271-exon-scaffold_27-1491911889:62020..64040 | TCONS_00056271-exon-scaffold_27-1491911889:62020..64040 | Clytia hemisphaerica | exon |
| TCONS_00056271-exon-scaffold_27-1510915933:62020..64040 | TCONS_00056271-exon-scaffold_27-1510915933:62020..64040 | Clytia hemisphaerica | exon |
| TCONS_00056271-exon-scaffold_27-1575043694:62020..64040 | TCONS_00056271-exon-scaffold_27-1575043694:62020..64040 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:62020..64040 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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