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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056268 ID=TCONS_00056268|Name=TCONS_00056268|organism=Clytia hemisphaerica|type=transcript|length=2481bp
cggaagttttgttttgaatataaatCCTTTGTGCTGAACTGTTTCGACAC
ACATgttttaaaatatcttttcttGAGTTGAATTTCTTATAAGCTAAATT
AATGCTTTCAAGACTATTTCGACCAATTTATTTAAAACCCCTTTTCAGTT
TTTCTCTGTTCTggtgaaagttagattttataAAAGGCAGACAGGTAGGG
CCTCGACACATTGGACGAAATTATCGAATATGCCTAAGATAGAGGGTTGA
CTTACAACTCCGAAAACTCAACGGAAACCTTTAACGAGCCAGACTGGAAG
AGAAGCATCAAAATACAAGTGCAAGacattggttgaaaaattattgaaac
gAAAAACTGCTTGGACAATTTTCGCGGCGGCTCCTCCCAAGCCGAACAAC
AATTCATTTACGATCTCTCTTCGtcgaaaaaaagaaacattttaatgatg
accATAATTATATTTTGATCGGGTAGTTTATCTTTTTGGCAATTGTAAAT
AGGtttttttgttatcttttttctcttaatattattttgaaagagaaaga
aaataatttaggCCACCCcaaagaaagaaattgaaaagagaATAATATCT
TTATCCACATATACTAAATCTTCTTAATATATTcatagaaaatttgtaaa
aatatgaTTGTCAAATGTTTATGGTGCAAGTGAAATGTTCAAATCAATAA
GCAACAAAACATATCCAGCATTATGTTGATTGTCCACAGGGGATACCAGA
TCTTGCAATGGATGACGTGGACCTGATTGGCTACGTCACtttttatacaa
agaaaaaacaatttgtgCACGAAATAGAGGGTAATCAGCTTCTTGCAGGA
GTTATCAAGGCTTTTCTTTGCACAACATCATGAGTTCCAAAACCTATTTT
GGATCAAGATCTCCAACGTTCATCTGATATTTCTCTAGAGCACAACCTCC
GCTTTCATAAAACAAAGTCAGTTTACTATCCAAGGCCAAAGTCTTGACAC
GAacttattcaaaaaaaatttgatattctttgaCAATTTGTTTAAAGTTA
CTCGACATTGCGACTGATCTTTTTGAATAACGAATCAATTTTCCCATATT
TTTATTAGACCGCAAGTACAGTGTGGTATATGTGGATATCATATAATATA
TCATAGAATGTAATTCAAAATATCCCAACAGACACAAGCCTCAATCAAGT
CAGTGGGGGTGCAACTGTACGCTTTTATCAGAACACACGTTTTGGAACAA
GAAACGGTGGGTAGCAATGACCACTTCAAAGTCGTAGAACCGTGTTGAGT
GACAAAGAAATTTATAGGAAATTTGTTCTATTTGACCTTCAATTTAAAAG
ACTTTCGGCAATACGAGGTTCGAGACTCCAGGAAAAGACGACCGAATTTC
GGAGAAAACATACCCTTAGGTGCAAAACATATCCTATCACATCTAAACAA
CTTATTTCTTACAGGtgtaaatgtaaacaaaatgcttgttgatgaaaaca
aagaaacatcAACCTTTGCGAGACTATCGGCAACCTTTCACCAGCTTGAT
GAGGATGGTCAAAAACGATACAGAGACCCGCAGTATGTACACGTCCGGAT
AAAAACTGTTGGGCAGAGTTATATTGAGGAAACGATTGACGCAGACCTGC
AGGATCTCTTGGCACGAATATTGGAGATGGAGCGACGAGGTTCTGGCTTG
ATGTATCATTCAGTGAATTCTACTAGCTTCACTTTGACGTAATTTCCGAG
CAACGCGGGGTCGCCTAATCTACCAGGACTTGTTGCgaataaaacaaaat
taaataacaaatatcattgttgaatttttccttttatcGGAGGATGGTTT
GTGCAAAATAGAGAAAtaaatcatgtttttttttttttgttttttgtaat
cttttttttttttcctagGTAAAAGAACAGCTGAAAGAGAAAAACCCTCT
AAAGacaagaaaagataaaaaaattatgaagacATTTTGCAACATAGTTT
GGAAGAAGACCAATAAGTCTTGATGGCAGATTTGGATTACTTTGTTGAGG
ATACCGATGGTGAAGTTATGGTGAATCCGGCTAAAAATCGTTCAAAGAAA
TTCGTGCTGTACAGCTCGATCTTCGACGAAGAAACAGAAAGCCAAAGCGA
gtctgaagaagaagaagtgtTTGTGAAAAGCCCAACCAATAATAGATGGA
GGAGACCGATCGTGAACCAAGTTATTGACGAATGCAAAGTTTCAGGAGAT
AATAACAGATGTGGTGAGAGTAGTTTGGCGGAGGAGGAACAATCAGACGA
CGACAGTTTTATTGATGATACTACagttttcgaaaatgaagaagaaactc
ACTATAGGTATGTGTTTCTTTAAAGGATTTTCCGCAATACCacatttttc
ttcctcctttaaTTTCTacaataaagaaaacaaaaacaaacaaaaaacaa
taaaaaaaacaaaagaaagtggCACTTCTTT Run BLAST on NCBI protein sequence of TCONS_00056268-protein >TCONS_00056268-protein ID=TCONS_00056268-protein|Name=TCONS_00056268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MADLDYFVEDTDGEVMVNPAKNRSKKFVLYSSIFDEETESQSESEEEEVF
VKSPTNNRWRRPIVNQVIDECKVSGDNNRCGESSLAEEEQSDDDSFIDDT
TVFENEEETHYRYVFL Run BLAST on NCBI transcript from alignment at scaffold_27:45934..48414 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056268 ID=TCONS_00056268|Name=TCONS_00056268|organism=Clytia hemisphaerica|type=transcript|length=2481bp|location=Sequence derived from alignment at scaffold_27:45934..48414 (Clytia hemisphaerica)
AAAGAAGTGccactttcttttgttttttttattgttttttgtttgttttt
gttttctttattgtAGAAAttaaaggaggaagaaaaatgtGGTATTGCGG
AAAATCCTTTAAAGAAACACATACCTATAGTgagtttcttcttcattttc
gaaaactGTAGTATCATCAATAAAACTGTCGTCGTCTGATTGTTCCTCCT
CCGCCAAACTACTCTCACCACATCTGTTATTATCTCCTGAAACTTTGCAT
TCGTCAATAACTTGGTTCACGATCGGTCTCCTCCATCTATTATTGGTTGG
GCTTTTCACAAacacttcttcttcttcagacTCGCTTTGGCTTTCTGTTT
CTTCGTCGAAGATCGAGCTGTACAGCACGAATTTCTTTGAACGATTTTTA
GCCGGATTCACCATAACTTCACCATCGGTATCCTCAACAAAGTAATCCAA
ATCTGCCATCAAGACTTATTGGTCTTCTTCCAAACTATGTTGCAAAATgt
cttcataatttttttatcttttcttgtCTTTAGAGGGTTTTTCTCTTTCA
GCTGTTCTTTTACctaggaaaaaaaaaaaagattacaaaaaacaaaaaaa
aaaaaacatgatttaTTTCTCTATTTTGCACAAACCATCCTCCgataaaa
ggaaaaattcaacaatgatatttgttatttaattttgttttattcGCAAC
AAGTCCTGGTAGATTAGGCGACCCCGCGTTGCTCGGAAATTACGTCAAAG
TGAAGCTAGTAGAATTCACTGAATGATACATCAAGCCAGAACCTCGTCGC
TCCATCTCCAATATTCGTGCCAAGAGATCCTGCAGGTCTGCGTCAATCGT
TTCCTCAATATAACTCTGCCCAACAGTTTTTATCCGGACGTGTACATACT
GCGGGTCTCTGTATCGTTTTTGACCATCCTCATCAAGCTGGTGAAAGGTT
GCCGATAGTCTCGCAAAGGTTgatgtttctttgttttcatcaacaagcat
tttgtttacatttacaCCTGTAAGAAATAAGTTGTTTAGATGTGATAGGA
TATGTTTTGCACCTAAGGGTATGTTTTCTCCGAAATTCGGTCGTCTTTTC
CTGGAGTCTCGAACCTCGTATTGCCGAAAGTCTTTTAAATTGAAGGTCAA
ATAGAACAAATTTCCTATAAATTTCTTTGTCACTCAACACGGTTCTACGA
CTTTGAAGTGGTCATTGCTACCCACCGTTTCTTGTTCCAAAACGTGTGTT
CTGATAAAAGCGTACAGTTGCACCCCCACTGACTTGATTGAGGCTTGTGT
CTGTTGGGATATTTTGAATTACATTCTATGATATATTATATGATATCCAC
ATATACCACACTGTACTTGCGGTCTAATAAAAATATGGGAAAATTGATTC
GTTATTCAAAAAGATCAGTCGCAATGTCGAGTAACTTTAAACAAATTGtc
aaagaatatcaaattttttttgaataagtTCGTGTCAAGACTTTGGCCTT
GGATAGTAAACTGACTTTGTTTTATGAAAGCGGAGGTTGTGCTCTAGAGA
AATATCAGATGAACGTTGGAGATCTTGATCCAAAATAGGTTTTGGAACTC
ATGATGTTGTGCAAAGAAAAGCCTTGATAACTCCTGCAAGAAGCTGATTA
CCCTCTATTTCGTGcacaaattgttttttctttgtataaaaaGTGACGTA
GCCAATCAGGTCCACGTCATCCATTGCAAGATCTGGTATCCCCTGTGGAC
AATCAACATAATGCTGGATATGTTTTGTTGCTTATTGATTTGAACATTTC
ACTTGCACCATAAACATTTGACAAtcatatttttacaaattttctatgAA
TATATTAAGAAGATTTAGTATATGTGGATAAAGATATTATtctcttttca
atttctttctttgGGGTGGcctaaattattttctttctctttcaaaataa
tattaagagaaaaaagataacaaaaaaaCCTATTTACAATTGCCAAAAAG
ATAAACTACCCGATCAAAATATAATTATggtcatcattaaaatgtttctt
tttttcgaCGAAGAGAGATCGTAAATGAATTGTTGTTCGGCTTGGGAGGA
GCCGCCGCGAAAATTGTCCAAGCAGTTTTTcgtttcaataatttttcaac
caatgtCTTGCACTTGTATTTTGATGCTTCTCTTCCAGTCTGGCTCGTTA
AAGGTTTCCGTTGAGTTTTCGGAGTTGTAAGTCAACCCTCTATCTTAGGC
ATATTCGATAATTTCGTCCAATGTGTCGAGGCCCTACCTGTCTGCCTTTt
ataaaatctaactttcaccAGAACAGAGAAAAACTGAAAAGGGGTTTTAA
ATAAATTGGTCGAAATAGTCTTGAAAGCATTAATTTAGCTTATAAGAAAT
TCAACTCaagaaaagatattttaaaacATGTGTGTCGAAACAGTTCAGCA
CAAAGGatttatattcaaaacaaaacttccg Coding sequence (CDS) from alignment at scaffold_27:45934..48414 >TCONS_00056268 ID=TCONS_00056268|Name=TCONS_00056268|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_27:45934..48414 (Clytia hemisphaerica)
TTAAAGAAACACATACCTATAGTgagtttcttcttcattttcgaaaactG
TAGTATCATCAATAAAACTGTCGTCGTCTGATTGTTCCTCCTCCGCCAAA
CTACTCTCACCACATCTGTTATTATCTCCTGAAACTTTGCATTCGTCAAT
AACTTGGTTCACGATCGGTCTCCTCCATCTATTATTGGTTGGGCTTTTCA
CAAacacttcttcttcttcagacTCGCTTTGGCTTTCTGTTTCTTCGTCG
AAGATCGAGCTGTACAGCACGAATTTCTTTGAACGATTTTTAGCCGGATT
CACCATAACTTCACCATCGGTATCCTCAACAAAGTAATCCAAATCTGCCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056268-exon-scaffold_27-1491911889:45934..48414 | TCONS_00056268-exon-scaffold_27-1491911889:45934..48414 | Clytia hemisphaerica | exon |
| TCONS_00056268-exon-scaffold_27-1510915933:45934..48414 | TCONS_00056268-exon-scaffold_27-1510915933:45934..48414 | Clytia hemisphaerica | exon |
| TCONS_00056268-exon-scaffold_27-1575043694:45934..48414 | TCONS_00056268-exon-scaffold_27-1575043694:45934..48414 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:45934..48414 . |
Blast
The following BLAST results are available for this feature:
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