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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056265 ID=TCONS_00056265|Name=TCONS_00056265|organism=Clytia hemisphaerica|type=transcript|length=1367bp
gaaataaaaaaaacacgttttttagCTTGTTGACAATACTTTAAACCCAA
GCGTTGGAACAACAGATCGGACGAAGTCATGAAAATACAGATAAAATCGA
GAACCCTCTTCTCCCCTTCTATAGAATCCCTACAACAAAAAGGATCCaag
caagaaaaaaacatatctaAAGAAGCAAACAAGATCTTCAAAGAGTTAAA
AGACTTGCAAGAAGAGCTACAATTTGACAGCCCACCCCCATCCCTAGAAT
TGAGAGATAAACTTGAAGAAGCCTTTGAATCTCTTATGAAATCCCACCAA
GTCTTAGAACGTTTTGTGGAAAAGACCAACAAGACTCGTGAAGACCTCCT
AGAAAAGCTAAGACTGAAAACAAGTAATCCAACCTGTCATACAAGATGAC
CCCAAGCGAACTTATTCAAAACGACAAGCAAAACAACAACGAGGACCAAA
CGATGACCTGCGCAAAGTGATTCAGAGATAGGAAACTCAAAGCACTCCAA
AAGTCTAGAAGAAATACGAGAAGAGTGATTACCCGCGAGGAAGGAACATG
GTTTGAAATGGTAAGCGAAGAAGCATTAATGTGGGACATCAGCCATCTTC
GGACTCTTTATTTAAGAAGACATGGAGAAACACCGCCCATGTGGACGGGT
GGCAACAAAAAAGAATAATATTTTCGTAGGGAACTAACTTTGTCTTATTC
TGCACTCTTCCCCTTTTGTTTTACTTACTCCATCCGATCATTGAATTTAG
TAAGTTCAGATGGAGGGCTCGGAAATCTCATTACATCACCTATTGAagca
agttttgttttgaatataaatCCTTTGTGCTAGACTGTTTCGACACTATt
aatgttttaaaatatttttcttgaagATTGAATTTCTTAAAAGTTAAATT
AATGCTTTTAAGACTATTTTGACCAATTTATCTAAAAccccttttcagat
tttctctGCGACATATGCCTTCAATCGTGAGGATTTTTAATTGTGCCTAC
AACGTGCTCGACGCCATCCAGCTCGCTGCGATTTTGCATTTTTGCTCCAA
AATATTATATCCGGATACAGGGTCATCAAAGAATTCACCTCAATGTCTGG
ATTCTCAAAAGGATGTCTTCTTAAATCAACCCATGCAACACCGCAACTTC
TAACGAGCTACAAACAATTTAACTTGCTAAAACGCGGAAACAGGGCGGCT
GAATTAGTAATCATGTGTCTCCGAGCCGCTATCCACACTGATTGTTACGA
TTTGGAAGAATAATGACAAAGGGTGGTCGATACCTCTCAAAGAGATCtca
aaaataaccatttttagGTTGACTCACTCTTCTTTTCGAGACCATGGCTT
TAATACTTCGCGACGGG Run BLAST on NCBI protein sequence of TCONS_00056265-protein >TCONS_00056265-protein ID=TCONS_00056265-protein|Name=TCONS_00056265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MKIQIKSRTLFSPSIESLQQKGSKQEKNISKEANKIFKELKDLQEELQFD
SPPPSLELRDKLEEAFESLMKSHQVLERFVEKTNKTREDLLEKLRLKTSN
PTCHTR Run BLAST on NCBI transcript from alignment at scaffold_27:30239..31605 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056265 ID=TCONS_00056265|Name=TCONS_00056265|organism=Clytia hemisphaerica|type=transcript|length=1367bp|location=Sequence derived from alignment at scaffold_27:30239..31605 (Clytia hemisphaerica)
CCCGTCGCGAAGTATTAAAGCCATGGTCTCGAAAAGAAGAGTGAGTCAAC
ctaaaaatggttatttttgaGATCTCTTTGAGAGGTATCGACCACCCTTT
GTCATTATTCTTCCAAATCGTAACAATCAGTGTGGATAGCGGCTCGGAGA
CACATGATTACTAATTCAGCCGCCCTGTTTCCGCGTTTTAGCAAGTTAAA
TTGTTTGTAGCTCGTTAGAAGTTGCGGTGTTGCATGGGTTGATTTAAGAA
GACATCCTTTTGAGAATCCAGACATTGAGGTGAATTCTTTGATGACCCTG
TATCCGGATATAATATTTTGGAGCAAAAATGCAAAATCGCAGCGAGCTGG
ATGGCGTCGAGCACGTTGTAGGCACAATTAAAAATCCTCACGATTGAAGG
CATATGTCGCagagaaaatctgaaaaggggTTTTAGATAAATTGGTCAAA
ATAGTCTTAAAAGCATTAATTTAACTTTTAAGAAATTCAATcttcaagaa
aaatattttaaaacattaATAGTGTCGAAACAGTCTAGCACAAAGGattt
atattcaaaacaaaacttgctTCAATAGGTGATGTAATGAGATTTCCGAG
CCCTCCATCTGAACTTACTAAATTCAATGATCGGATGGAGTAAGTAAAAC
AAAAGGGGAAGAGTGCAGAATAAGACAAAGTTAGTTCCCTACGAAAATAT
TATTCTTTTTTGTTGCCACCCGTCCACATGGGCGGTGTTTCTCCATGTCT
TCTTAAATAAAGAGTCCGAAGATGGCTGATGTCCCACATTAATGCTTCTT
CGCTTACCATTTCAAACCATGTTCCTTCCTCGCGGGTAATCACTCTTCTC
GTATTTCTTCTAGACTTTTGGAGTGCTTTGAGTTTCCTATCTCTGAATCA
CTTTGCGCAGGTCATCGTTTGGTCCTCGTTGTTGTTTTGCTTGTCGTTTT
GAATAAGTTCGCTTGGGGTCATCTTGTATGACAGGTTGGATTACTTGTTT
TCAGTCTTAGCTTTTCTAGGAGGTCTTCACGAGTCTTGTTGGTCTTTTCC
ACAAAACGTTCTAAGACTTGGTGGGATTTCATAAGAGATTCAAAGGCTTC
TTCAAGTTTATCTCTCAATTCTAGGGATGGGGGTGGGCTGTCAAATTGTA
GCTCTTCTTGCAAGTCTTTTAACTCTTTGAAGATCTTGTTTGCTTCTTta
gatatgtttttttcttgcttGGATCCTTTTTGTTGTAGGGATTCTATAGA
AGGGGAGAAGAGGGTTCTCGATTTTATCTGTATTTTCATGACTTCGTCCG
ATCTGTTGTTCCAACGCTTGGGTTTAAAGTATTGTCAACAAGctaaaaaa
cgtgttttttttatttc Coding sequence (CDS) from alignment at scaffold_27:30239..31605 >TCONS_00056265 ID=TCONS_00056265|Name=TCONS_00056265|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_27:30239..31605 (Clytia hemisphaerica)
TCATCTTGTATGACAGGTTGGATTACTTGTTTTCAGTCTTAGCTTTTCTA
GGAGGTCTTCACGAGTCTTGTTGGTCTTTTCCACAAAACGTTCTAAGACT
TGGTGGGATTTCATAAGAGATTCAAAGGCTTCTTCAAGTTTATCTCTCAA
TTCTAGGGATGGGGGTGGGCTGTCAAATTGTAGCTCTTCTTGCAAGTCTT
TTAACTCTTTGAAGATCTTGTTTGCTTCTTtagatatgtttttttcttgc
ttGGATCCTTTTTGTTGTAGGGATTCTATAGAAGGGGAGAAGAGGGTTCT
CGATTTTATCTGTATTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056265-exon-scaffold_27-1491911889:30239..31605 | TCONS_00056265-exon-scaffold_27-1491911889:30239..31605 | Clytia hemisphaerica | exon |
| TCONS_00056265-exon-scaffold_27-1510915933:30239..31605 | TCONS_00056265-exon-scaffold_27-1510915933:30239..31605 | Clytia hemisphaerica | exon |
| TCONS_00056265-exon-scaffold_27-1575043694:30239..31605 | TCONS_00056265-exon-scaffold_27-1575043694:30239..31605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:30239..31605 . |
Blast
The following BLAST results are available for this feature:
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