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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056262 ID=TCONS_00056262|Name=TCONS_00056262|organism=Clytia hemisphaerica|type=transcript|length=4700bp
gtttgaacCTTATATGGAGAAACCATTGtaattaaaatttcgaaaattcc
taTAAAAACCGacgattttttctaaaaaatcaagTATCTAAACAAATCAA
GACTCGGATTCAACACAAAAACGCTGTCTAAACGATCGCGAACCACGGCT
CACGTGCATCATAGAATTCATCAAtttaaagaagaagaagaaaataaagg
aaCCATTGAAAATTCCCATTCTGAAATGGACGAACAAGAATTGGACCAAA
TTGAAGAAGAGGAATTAATTCCAGTTTCTAAACCATAACCTAANCCATTG
AAAATTCCCATTCTGAAATGGACGAACAAGAATTGGACCAAATTGAAGAA
GAGGAATTAATTCCAGTTTCTAAACCATAACCTAAGAAAAAGAAGATCGA
AAAGCTACGTGTTCCCAGCCTTCGAGCATCTCTACAGTAAAGCAACAAAT
CCAATTGGAAGAGGATAATGGATACGCGCAAAGAAATATGTTGAATGCCA
GAGCAAGTAAGGGTAGTAAAAGTTTAGTTGTGTCAAGAGAAACTTCTGCT
TTTGATGTCGACGCAATCAGTCCTATTGACTTTCGTGACGCCCCTGGACA
agttattttgaagaaaaacgcTTTCCAACTCAAGCTTAAGGCCGTTTGTG
TGGGTGCAAATCGGGTTAACTTCTCAAAAGATAAGGACCCCAAATGTCAG
GAGGAGATTGTCTTGGATATAAAGATGATCTCGTCCGCAGGTCTAACGAT
GAAAATGGTGTGCCTGATGaaattgatttcaaagataTAGAATTCAGAAT
TTATTTACCAAAAAGATTTCAAGACCAATTTGATCTCTCATTTCTCATTG
GAGCTCTGGTTCTTGTACCTGTTCAATGAATTGAAATGgataaatgaaaa
taacaaaGACAAGTCCAGTATTTCTTTAATGCTTTTTCTTAACAATCGAC
CGTGTTGTGAAAAAATTGGTATGTCAAAGGAGGACTACACCCTTCAATTG
AAGAATTTGAAGCTGAGGCTGAGAAAAATAGTTTAAACGATTATGTTCCA
ACTGGGGTTTTTTTGCCAGCTGTCTTTCTTACATGGAAGACTTTGCAAAA
AAGTTTTACAAACGTGAAACACATATAACCGATAGAATTCACGgacaaaa
atataataaatcATTTTAACATTATTGCATAGCATCGTGTTGTTTTTGTA
TGCAATTAAAACATTACTTATTTTATGGTTTTACAGATTTTGTTTATTAA
TGGATGTAATttaatgtttgttttttgtttttttattctcttttaattga
ttttttcagAGCAAAGAGTCGATTCGCTTGCCAAGGCCTTCAATCTTGCA
AAGAATTCGATCAAACTCAATCAACAATGTGCCTCGATGCTATGAATATC
GTTGAAAAGATTAAACTCGATAGAGAAATTCTAGAACAgttgattttttc
gaatttttttatcttcgataaTAGTGTTTATGATGACAACGCAAATATGC
TCATACCGCTCAGTTCGTAATTGTCTTATACACGAAATgatatttttaca
ttttggGAAAGCCGAAGAAACTATCATAATCTAAGATTAGACAAGGCAGA
AAACGAATGCAATTTTTATTTGATACTTTTGGTGGAAGATTATCATTGGA
AAAATGACTATTCTATAATTCCTTTGGATGAGCAGTTCGAAATGATTTTG
GATAGTTTGCGATACCGTTCAGATCTTTATTATAACTACACTGGTTTCTC
AAATGATCGTTATTTTGAATGCGAGCCCTCAATATTTAATACTTTGTTTT
ATTCGAGTTTGGTTCCAGTTCATGATAATCATTGTTTGGTTGTTAcagat
aattttttattgagtgTTATGAATGAAAGGAATTTGGGGGGGGGGATATA
ATAGAGCCAATCGAATTTTAAAATATATGTATGGTATTGATAATTGCTAC
AATGTAATCTCAAAATCTCAAATTTATGATTTTGTTTCTTTAACAAACAC
TAAGGAAACTCTTATAGGTTTACAATTAAACCAGAAATATCTTTGTATTT
TGCAGATTAATAATAAGCATTTTCAACTATTATATTCATTTGATTTTATA
AATAATAGAAGACATTGCTTCACTCTTCAAGTGAGCAAATCTTTGTATAT
AGAAGATTATTTGAATTTATTTCAGAATGACGTGGGCAATGATGAGAAAT
TGTTATGTGAAAGTGGCTTAGAAATTTTATGTATTGATAAATATTCTTCG
GCTAACAAAGGGCGTAGAGTTTTGTCGTTACTTTCAAGTTGTTATTTACG
ATTATTGAACTTGATAGCTTTTCTAATTACTTTTTTTGTGGCGAAAGTTT
AGTTTCAGAAATTTTTGAGGAGTTGAGTGTTTATGTTTATACGCGGTTTT
TTATGTAGCCAGTAAAGTTGGAAATGATTTTGATGCAGCGTACACTATTT
TGTTTACCTGCATCGTGCTTTCAGATAAGGGTTTTTGTTTTAAAAAAGTG
TCTTGAATGTGGTGCAGAGTTTTCTTGGCATTTTTTCTCACTAAGAGCGG
CAAGTCTTATGTGAAACAAGTTACACAATGTAGAGCGAAATTACATGTAA
ATAAATACATACCTGACTACGATGGAGAGGAATTAATGTTTGGTAAGTAT
ATAGATAATTTTAATGTTGTAATACTAATTTTTTTATTTTTAAGACGTGT
ATCACCACCATGCATTCACCACTTCAACGATTATGAAAGTAATATTTGCA
AACCTTTATTTAACGTTGGTATTTTTGTTGTAGGTAAATTTACATTAATC
TAGGTTTAGTTTTTTTATATGTTTGTAAATTGTAAAACAATTTGTTTGGA
GAAAAAGAAAATATTACATTTGCGTCTGGCTTTGTGTATATAAAAAAACC
CTTCTCACGTTTTAGTACTTTGATCATTTTTTTTTATTAATCATGCATGT
TTATTTATATTTTTCAGATATCAAAAGAAAAAAAGACATTAGAAATAGAA
AATAAAAAAAAGGGAAAAAAGGTGAAGAGATACAACAACGATCGATTGTT
TTGGTTTGATTGTTTCTGATTTTTCTTTTTAAGAAATGGCAAAAGAAGTA
AAGTGTGTACTTCAGCGAGACTTTCAAAAGTCGAGAAACATTAAAAAAGT
ATTTCATTGAGGAACACCGTATTCCAAGAAACAACCAGTCACTTGCAGCG
AGACATTCAAAAAGTATTTCATTGAGGAACATCGTATTCCAAGAAACAAC
TAGTCACTTGGCTGGTATGTCAAGTTATAGTGGAAGAGAGGTTGATGCTA
AAAGTTTTGAGACCATGTTGAGGCTTTTGAAGGTCTTAAAACAAAAAGCA
ACTAAATACACTTTACAAAGAGAAAAGGTGAAACTTGACTCGAACAAAAT
ACGACACATGTTTGAAGCTTACGAGAATTTCGATGCGGCTGACAGTGTAG
ATTCTGAAACTACTATTGAGAGTGAAAGAATCAACAGATCCTCTGCTGTG
GCTTGGATTCTTTACTACTTTAATGCGTTTATAAATAACGATGTAAAAAC
TTTGAGTGAAAAAGAGACCAATAACATTGTCACATTCTATTCTCAAGAGG
AACGACATTATGCAAAATGCACTCGAGTCAAAATTGAACAGGAAGATAAT
AAAGAACTTGATTTTAACggtaaaatgaaaatctatgTTGGCATCGCTTC
ACCCTTGGAAGTCTTTATGAACTTGTCAAAAGTTTTATTTAAGacgtttt
tttctggaatttcaAAATCCCAAAACAGTTTTCCAATATTCTTTGAAATA
AATAACTGCAGAATTTTCTAAAAGCGAAGACACAATGGACAACTTTGCTT
ATGGAGACGGTTATAGTACTAACTACGAATGAATATTTTGAAGATTGTGC
GCAACGTAAAACTACCAGATAATATTCTGTACTTGTTTCTGGTCCTGTGG
CTAATATTAAACGTCTCTTTAGTGACGGCCTATTACGATATACGATATTA
ATTCGTTTGGATCTATTTCCAGACATTTCAAGGGAAGAATCGACTCAAGC
GAAAACAAAACAGAATACATAACAGAACATGAATTTAAgatagacaaaaa
aaaattcaaaatcctaTTCAAGTTGTGCTATGAACAAATTCAAATAAATC
ACGAAAACAAGTCCAAGACTCGACAACGTATTCAAAAGATGTTGAAAGGA
CATATTGCGTCAAActccaaaaaaatcaatttagaatCTTATCCAAATTT
GAACAACGACGATTTAATTACCATAAGAACATTTTCCAAACAAGTAATCA
CCATAATGAATTCAATGACAAAACAGAtcaaagaacatcaaaaatcatAC
AACCGAAAGccttcaaaaaaaagaaatactaACTTTATCTTCTGAAGAAG
ACGAAACTGATTTTGATTGTAACGAAGTGTCATCTTCAACACATCCAGCA
CCATCAGTTACAGCAGCTAGAAAGTCACTTTtaacaaattccaaaaatgt
tGGACCAGTGAAAAGAAAATGTGGGATAAAGAATAGAATGAAAATAATGC
TACATCaacaaagaaagcaaaaaaagtcGTCAAAGAGCCAGCTTAAACAC
CAATCAAATTTTCTGGAgaataaattcaaaaagttatttttaagaaacat
aACTTAAAGAAAGCATCCAAAGCAGAAACCAAATAAAAGAGAGTGAAGAG Run BLAST on NCBI protein sequence of TCONS_00056262-protein >TCONS_00056262-protein ID=TCONS_00056262-protein|Name=TCONS_00056262-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MSSYSGREVDAKSFETMLRLLKVLKQKATKYTLQREKVKLDSNKIRHMFE
AYENFDAADSVDSETTIESERINRSSAVAWILYYFNAFINNDVKTLSEKE
TNNIVTFYSQEERHYAKCTRVKIEQEDNKELDFNGKMKIYVGIASPLEVF
MNLSKVLFKTFFSGISKSQNSFPIFFEINNCRIF Run BLAST on NCBI transcript from alignment at scaffold_27:13673..18372 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056262 ID=TCONS_00056262|Name=TCONS_00056262|organism=Clytia hemisphaerica|type=transcript|length=4700bp|location=Sequence derived from alignment at scaffold_27:13673..18372 (Clytia hemisphaerica)
CTCTTCACTCTCTTTTATTTGGTTTCTGCTTTGGATGCTTTCTTTAAGTt
atgtttcttaaaaataactttttgaatttattcTCCAGAAAATTTGATTG
GTGTTTAAGCTGGCTCTTTGACgactttttttgctttctttgttGATGTA
GCATTATTTTCATTCTATTCTTTATCCCACATTTTCTTTTCACTGGTCCa
acatttttggaatttgttaAAAGTGACTTTCTAGCTGCTGTAACTGATGG
TGCTGGATGTGTTGAAGATGACACTTCGTTACAATCAAAATCAGTTTCGT
CTTCTTCAGAAGATAAAGTtagtatttcttttttttgaaggCTTTCGGTT
GTatgatttttgatgttctttgaTCTGTTTTGTCATTGAATTCATTATGG
TGATTACTTGTTTGGAAAATGTTCTTATGGTAATTAAATCGTCGTTGTTC
AAATTTGGATAAGattctaaattgatttttttggagTTTGACGCAATATG
TCCTTTCAACATCTTTTGAATACGTTGTCGAGTCTTGGACTTGTTTTCGT
GATTTATTTGAATTTGTTCATAGCACAACTTGAAtaggattttgaatttt
tttttgtctatcTTAAATTCATGTTCTGTTATGTATTCTGTTTTGTTTTC
GCTTGAGTCGATTCTTCCCTTGAAATGTCTGGAAATAGATCCAAACGAAT
TAATATCGTATATCGTAATAGGCCGTCACTAAAGAGACGTTTAATATTAG
CCACAGGACCAGAAACAAGTACAGAATATTATCTGGTAGTTTTACGTTGC
GCACAATCTTCAAAATATTCATTCGTAGTTAGTACTATAACCGTCTCCAT
AAGCAAAGTTGTCCATTGTGTCTTCGCTTTTAGAAAATTCTGCAGTTATT
TATTTCAAAGAATATTGGAAAACTGTTTTGGGATTTtgaaattccagaaa
aaaacgtCTTAAATAAAACTTTTGACAAGTTCATAAAGACTTCCAAGGGT
GAAGCGATGCCAAcatagattttcattttaccGTTAAAATCAAGTTCTTT
ATTATCTTCCTGTTCAATTTTGACTCGAGTGCATTTTGCATAATGTCGTT
CCTCTTGAGAATAGAATGTGACAATGTTATTGGTCTCTTTTTCACTCAAA
GTTTTTACATCGTTATTTATAAACGCATTAAAGTAGTAAAGAATCCAAGC
CACAGCAGAGGATCTGTTGATTCTTTCACTCTCAATAGTAGTTTCAGAAT
CTACACTGTCAGCCGCATCGAAATTCTCGTAAGCTTCAAACATGTGTCGT
ATTTTGTTCGAGTCAAGTTTCACCTTTTCTCTTTGTAAAGTGTATTTAGT
TGCTTTTTGTTTTAAGACCTTCAAAAGCCTCAACATGGTCTCAAAACTTT
TAGCATCAACCTCTCTTCCACTATAACTTGACATACCAGCCAAGTGACTA
GTTGTTTCTTGGAATACGATGTTCCTCAATGAAATACTTTTTGAATGTCT
CGCTGCAAGTGACTGGTTGTTTCTTGGAATACGGTGTTCCTCAATGAAAT
ACTTTTTTAATGTTTCTCGACTTTTGAAAGTCTCGCTGAAGTACACACTT
TACTTCTTTTGCCATTTCTTAAAAAGAAAAATCAGAAACAATCAAACCAA
AACAATCGATCGTTGTTGTATCTCTTCACCTTTTTTCCCTTTTTTTTATT
TTCTATTTCTAATGTCTTTTTTTCTTTTGATATCTGAAAAATATAAATAA
ACATGCATGATTAATAAAAAAAAATGATCAAAGTACTAAAACGTGAGAAG
GGTTTTTTTATATACACAAAGCCAGACGCAAATGTAATATTTTCTTTTTC
TCCAAACAAATTGTTTTACAATTTACAAACATATAAAAAAACTAAACCTA
GATTAATGTAAATTTACCTACAACAAAAATACCAACGTTAAATAAAGGTT
TGCAAATATTACTTTCATAATCGTTGAAGTGGTGAATGCATGGTGGTGAT
ACACGTCTTAAAAATAAAAAAATTAGTATTACAACATTAAAATTATCTAT
ATACTTACCAAACATTAATTCCTCTCCATCGTAGTCAGGTATGTATTTAT
TTACATGTAATTTCGCTCTACATTGTGTAACTTGTTTCACATAAGACTTG
CCGCTCTTAGTGAGAAAAAATGCCAAGAAAACTCTGCACCACATTCAAGA
CACTTTTTTAAAACAAAAACCCTTATCTGAAAGCACGATGCAGGTAAACA
AAATAGTGTACGCTGCATCAAAATCATTTCCAACTTTACTGGCTACATAA
AAAACCGCGTATAAACATAAACACTCAACTCCTCAAAAATTTCTGAAACT
AAACTTTCGCCACAAAAAAAGTAATTAGAAAAGCTATCAAGTTCAATAAT
CGTAAATAACAACTTGAAAGTAACGACAAAACTCTACGCCCTTTGTTAGC
CGAAGAATATTTATCAATACATAAAATTTCTAAGCCACTTTCACATAACA
ATTTCTCATCATTGCCCACGTCATTCTGAAATAAATTCAAATAATCTTCT
ATATACAAAGATTTGCTCACTTGAAGAGTGAAGCAATGTCTTCTATTATT
TATAAAATCAAATGAATATAATAGTTGAAAATGCTTATTATTAATCTGCA
AAATACAAAGATATTTCTGGTTTAATTGTAAACCTATAAGAGTTTCCTTA
GTGTTTGTTAAAGAAACAAAATCATAAATTTGAGATTTTGAGATTACATT
GTAGCAATTATCAATACCATACATATATTTTAAAATTCGATTGGCTCTAT
TATATCCCCCCCCCCAAATTCCTTTCATTCATAAcactcaataaaaaatt
atctgTAACAACCAAACAATGATTATCATGAACTGGAACCAAACTCGAAT
AAAACAAAGTATTAAATATTGAGGGCTCGCATTCAAAATAACGATCATTT
GAGAAACCAGTGTAGTTATAATAAAGATCTGAACGGTATCGCAAACTATC
CAAAATCATTTCGAACTGCTCATCCAAAGGAATTATAGAATAGTCATTTT
TCCAATGATAATCTTCCACCAAAAGTATCAAATAAAAATTGCATTCGTTT
TCTGCCTTGTCTAATCTTAGATTATGATAGTTTCTTCGGCTTTCccaaaa
tgtaaaaatatcATTTCGTGTATAAGACAATTACGAACTGAGCGGTATGA
GCATATTTGCGTTGTCATCATAAACACTAttatcgaagataaaaaaattc
gaaaaaatcaacTGTTCTAGAATTTCTCTATCGAGTTTAATCTTTTCAAC
GATATTCATAGCATCGAGGCACATTGTTGATTGAGTTTGATCGAATTCTT
TGCAAGATTGAAGGCCTTGGCAAGCGAATCGACTCTTTGCTctgaaaaaa
tcaattaaaagagaataaaaaaacaaaaaacaaacattaaATTACATCCA
TTAATAAACAAAATCTGTAAAACCATAAAATAAGTAATGTTTTAATTGCA
TACAAAAACAACACGATGCTATGCAATAATGTTAAAATgatttattatat
ttttgtcCGTGAATTCTATCGGTTATATGTGTTTCACGTTTGTAAAACTT
TTTTGCAAAGTCTTCCATGTAAGAAAGACAGCTGGCAAAAAAACCCCAGT
TGGAACATAATCGTTTAAACTATTTTTCTCAGCCTCAGCTTCAAATTCTT
CAATTGAAGGGTGTAGTCCTCCTTTGACATACCAATTTTTTCACAACACG
GTCGATTGTTAAGAAAAAGCATTAAAGAAATACTGGACTTGTCtttgtta
ttttcatttatcCATTTCAATTCATTGAACAGGTACAAGAACCAGAGCTC
CAATGAGAAATGAGAGATCAAATTGGTCTTGAAATCTTTTTGGTAAATAA
ATTCTGAATTCTAtatctttgaaatcaatttCATCAGGCACACCATTTTC
ATCGTTAGACCTGCGGACGAGATCATCTTTATATCCAAGACAATCTCCTC
CTGACATTTGGGGTCCTTATCTTTTGAGAAGTTAACCCGATTTGCACCCA
CACAAACGGCCTTAAGCTTGAGTTGGAAAgcgtttttcttcaaaataact
TGTCCAGGGGCGTCACGAAAGTCAATAGGACTGATTGCGTCGACATCAAA
AGCAGAAGTTTCTCTTGACACAACTAAACTTTTACTACCCTTACTTGCTC
TGGCATTCAACATATTTCTTTGCGCGTATCCATTATCCTCTTCCAATTGG
ATTTGTTGCTTTACTGTAGAGATGCTCGAAGGCTGGGAACACGTAGCTTT
TCGATCTTCTTTTTCTTAGGTTATGGTTTAGAAACTGGAATTAATTCCTC
TTCTTCAATTTGGTCCAATTCTTGTTCGTCCATTTCAGAATGGGAATTTT
CAATGGNTTAGGTTATGGTTTAGAAACTGGAATTAATTCCTCTTCTTCAA
TTTGGTCCAATTCTTGTTCGTCCATTTCAGAATGGGAATTTTCAATGGtt
cctttattttcttcttcttctttaaaTTGATGAATTCTATGATGCACGTG
AGCCGTGGTTCGCGATCGTTTAGACAGCGTTTTTGTGTTGAATCCGAGTC
TTGATTTGTTTAGATActtgattttttagaaaaaatcgtCGGTTTTTAta
ggaattttcgaaattttaattaCAATGGTTTCTCCATATAAGgttcaaac
Coding sequence (CDS) from alignment at scaffold_27:13673..18372 >TCONS_00056262 ID=TCONS_00056262|Name=TCONS_00056262|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_27:13673..18372 (Clytia hemisphaerica)
TTAGAAAATTCTGCAGTTATTTATTTCAAAGAATATTGGAAAACTGTTTT
GGGATTTtgaaattccagaaaaaaacgtCTTAAATAAAACTTTTGACAAG
TTCATAAAGACTTCCAAGGGTGAAGCGATGCCAAcatagattttcatttt
accGTTAAAATCAAGTTCTTTATTATCTTCCTGTTCAATTTTGACTCGAG
TGCATTTTGCATAATGTCGTTCCTCTTGAGAATAGAATGTGACAATGTTA
TTGGTCTCTTTTTCACTCAAAGTTTTTACATCGTTATTTATAAACGCATT
AAAGTAGTAAAGAATCCAAGCCACAGCAGAGGATCTGTTGATTCTTTCAC
TCTCAATAGTAGTTTCAGAATCTACACTGTCAGCCGCATCGAAATTCTCG
TAAGCTTCAAACATGTGTCGTATTTTGTTCGAGTCAAGTTTCACCTTTTC
TCTTTGTAAAGTGTATTTAGTTGCTTTTTGTTTTAAGACCTTCAAAAGCC
TCAACATGGTCTCAAAACTTTTAGCATCAACCTCTCTTCCACTATAACTT
GACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056262-exon-scaffold_27-1491911889:13673..18372 | TCONS_00056262-exon-scaffold_27-1491911889:13673..18372 | Clytia hemisphaerica | exon |
| TCONS_00056262-exon-scaffold_27-1510915933:13673..18372 | TCONS_00056262-exon-scaffold_27-1510915933:13673..18372 | Clytia hemisphaerica | exon |
| TCONS_00056262-exon-scaffold_27-1575043694:13673..18372 | TCONS_00056262-exon-scaffold_27-1575043694:13673..18372 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:13673..18372 . |
Blast
The following BLAST results are available for this feature:
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