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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056246 ID=TCONS_00056246|Name=TCONS_00056246|organism=Clytia hemisphaerica|type=transcript|length=685bp
GCCTCTTTAGATCCTTTTAAAGTTTGCAAAACTGCGTACTTATTTTCGGC
TAAAGCGCGTGCCTCCGCGTACGTATCTGGATAGTGTAGCATGACGTATT
CTTTTAGATCGGGTTGAAGACCctgaacaaaaacatttttggctTCCTTA
TCCGACAACTCAAGCTTACGGGCCTCGTTCTGGATGGAAAGGGAGTATGT
TTCCAGGGACTCCGTCTTTGTCATTTTCCTGCCGTGTAATTGGGCTATTT
TTAGCATTTCCAGTTTTTTTggataatatttttctttgaaaatatctttt
atctttttaaaagtATCGATTTCTCCGGGTTGAAGAGTTCCGAAGAAAAA
TAGAGCGTTTTCCTCGAGGCAAGAAGGAAACACTAGAAGTTTATCGTCAT
CAGTAAGACTATAGTACTTTGCGTATTgatcaaaataattgaaaaaatct
gTGACAAAGGGTTCCTCGGTGCCCTTAAACTTCGGTTGTCGCATGGCCGT
TTTGGTCTTTTGATCCGCAATAGTTTTCATTAATTCTTGCAAGGCCTTGT
CTTGACGAGAACTATTGTCTGCTAGCTGCAGCGTAATTCGACGAAGCATC
TCGTCGGATGCAGGCTCTTCCTCGAACGACATTAGTGCGGAAGACGAATG
TCTAGTTTTGGCGcctttattaaaattttcctgGG Run BLAST on NCBI transcript from alignment at scaffold_27:89273..90015+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056246 ID=TCONS_00056246|Name=TCONS_00056246|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at scaffold_27:89273..90015+ (Clytia hemisphaerica)
GCCTCTTTAGATCCTTTTAAAGTTTGCAAAACTGCGTACTTATTTTCGGC
TAAAGCGCGTGCCTCCGCGTACGTATCTGGATAGTGTAGCATGACGTATT
CTTTTAGATCGGGTTGAAGACCctgaacaaaaacatttttggctTCCTTA
TCCGACAACTCAAGCTTACGGGCCTCGTTCTGGATGGAAAGGGAGTATGT
TTCCAGGGACTCCGTCTTTGTCATTTTCCTGCCGTGTAATTGGGCTATTT
TTAGCATTTCCAGTTTTTTTggataatatttttctttgaaaatatctttt
atctttttaaaagtATCGATTTCTCCGGGTTGAAGAGTTCCGAAGAAAAA
TAGAGCGTTTTCCTCGAGGCAAGAAGGAAACACTAGAAGNGGGAGTTCCG
AAGAGAAAAAGAGCGTTTTCCTCGAGGCAAGAAGGAAACACTAGAAGTTT
ATCGTCATCAGTAAGACTATAGTACTTTGCGTATTgatcaaaataattga
aaaaatctgTGACAAAGGGTTCCTCGGTGCCCTTAAACTTCGGTTGTCGC
ATGGCCGTTTTGGTCTTTTGATCCGCAATAGTTTTCATTAATTCTTGCAA
GGCCTTGTCTTGACGAGAACTATTGTCTGCTAGCTGCAGCGTAATTCGAC
GAAGCATCTCGTCGGATGCAGGCTCTTCCTCGAACGACATTAGTGCGGAA
GACGAATGTCTAGTTTTGGCGcctttattaaaattttcctgGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056246-exon-scaffold_27-1491911889:89273..89640 | TCONS_00056246-exon-scaffold_27-1491911889:89273..89640 | Clytia hemisphaerica | exon |
| TCONS_00056246-exon-scaffold_27-1510915933:89273..89640 | TCONS_00056246-exon-scaffold_27-1510915933:89273..89640 | Clytia hemisphaerica | exon |
| TCONS_00056246-exon-scaffold_27-1575043694:89273..89640 | TCONS_00056246-exon-scaffold_27-1575043694:89273..89640 | Clytia hemisphaerica | exon |
| TCONS_00056246-exon-scaffold_27-1491911889:89699..90015 | TCONS_00056246-exon-scaffold_27-1491911889:89699..90015 | Clytia hemisphaerica | exon |
| TCONS_00056246-exon-scaffold_27-1510915933:89699..90015 | TCONS_00056246-exon-scaffold_27-1510915933:89699..90015 | Clytia hemisphaerica | exon |
| TCONS_00056246-exon-scaffold_27-1575043694:89699..90015 | TCONS_00056246-exon-scaffold_27-1575043694:89699..90015 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_27 | supercontig | scaffold_27:89273..90015 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005162 | Retrotrans_gag_dom |
Blast
The following BLAST results are available for this feature:
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