TCONS_00056217 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056217
Unique NameTCONS_00056217
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056217 ID=TCONS_00056217|Name=TCONS_00056217|organism=Clytia hemisphaerica|type=transcript|length=350bp
ATTTGCATTGCACGTTCGTGCCCTGGTTTCATGGTCTTCTCAGCTGTGCA
CTCGTTTCGCCCGCATTCTCATTCGCACGTTCGTGCTCAGGCTTCTTGGC
GATCACAGCTGTGGTTCTACCTTGTTCACGTTTCGTGccttttttgtttg
attattagtcattttttcattaattagaCATTTTTCCACTAATTAGTCAT
TTTTCACTAACTAGCCATTTTCATTAATTAGTCATTttttcactaattgg
tcattttcaCTAATTAGCATCATCATTcctagttttcatttatttagtca
aattgtcaatttttctaaattattttctttgtattcatttcagtttgaac
Run BLAST on NCBI

transcript from alignment at scaffold_269:3104..3453

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056217 ID=TCONS_00056217|Name=TCONS_00056217|organism=Clytia hemisphaerica|type=transcript|length=350bp|location=Sequence derived from alignment at scaffold_269:3104..3453 (Clytia hemisphaerica)
gttcaaactgaaatgaatacaaagaaaataatttagaaaaattgacaatt
tgactaaataaatgaaaactaggAATGATGATGCTAATTAGtgaaaatga
ccaattagtgaaaaAATGACTAATTAATGAAAATGGCTAGTTAGTGAAAA
ATGACTAATTAGTGGAAAAATGtctaattaatgaaaaaatgactaataat
caaacaaaaaaggCACGAAACGTGAACAAGGTAGAACCACAGCTGTGATC
GCCAAGAAGCCTGAGCACGAACGTGCGAATGAGAATGCGGGCGAAACGAG
TGCACAGCTGAGAAGACCATGAAACCAGGGCACGAACGTGCAATGCAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035398XLOC_035398Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056217-exon-scaffold_269-1491911889:3104..3453TCONS_00056217-exon-scaffold_269-1491911889:3104..3453Clytia hemisphaericaexon
TCONS_00056217-exon-scaffold_269-1510915933:3104..3453TCONS_00056217-exon-scaffold_269-1510915933:3104..3453Clytia hemisphaericaexon
TCONS_00056217-exon-scaffold_269-1575043694:3104..3453TCONS_00056217-exon-scaffold_269-1575043694:3104..3453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:3104..3453 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.59574	4.93346	3.79251	3.54882	2.39649	0.712067	1.29396	1.98244	0.843746	1.12636	0	1.19489	1.62763	3.30107	0.666371	1.63565	0	0.85256	1.36795	2.76425	0.0385659	0	0.709946	0.595987	0.270148	1.338	0.841998	1.09739	0.881028	0.595363
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056217 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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