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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056197 ID=TCONS_00056197|Name=TCONS_00056197|organism=Clytia hemisphaerica|type=transcript|length=1175bp
GTCACAACGTATATGCAAAACAAGGTGGTCTTTAGTGAAGCAGAAATCAC
ATCGTTGAGGTGTCCGATACCGCTCGAGGAAACTGGCTTTATTACAAAGC
ACCGGAGATCGAATTCTACGGAAGTGACTTTTCAATTCCGTCACTTAATA
CTCCATGAGTATTTGACAGGATTGTATATTTCAATCACACAAGATATCac
acctttttttgaaaataaagaattatCGAGTTGCAAACCAACCATTTTGG
GAATCCAGCGGATGCTGAAAATGGACGAGAATGAACTATttcttgcattt
ttcaaaaacctaCAAACCACCTACAAGAATCTATTTCccaacatttttgg
aaaaagcaAGCCAAAAAGCAAGCCAGAATTTGAAGACTTTATTGGCAGCT
TCATTGAGATGCCGTCATCGATGATCGAAGATGAAAACTCACTTATCATT
GACACTAGAGAAGATGATCACGTTGAATTTCTTACGCTATATAAAGAATC
ACGTGACAACCTTATCTCGAAACGATTTGTGAAAGCAACGATTAAAATTA
GAGAAAATTACAAGGATGTTCGAAACATCGTCAATTTGATAAACGATTTG
AACATAAGAAACATTAGCTCTCTTACAGTATGGAGTCGATCATATGATGA
GGATGAAAAGCATCTCATTTCTTTGGTATCGGGTGAGGAATACAAGACAA
AGATCAGGATCGGTCATTATACATCATACTTTAAATGCGAACAAGGAAAA
CTTACTTTGGAGTGTCCTCCTTCTTTATTGAACAAAATACCAGAAGATTT
GTTACAAAAGTCAACTTCGTTTCATGTTGAAATTGAGCTGATATCCGGTG
TCGGTAATATTGATGGAGTGAAATTATTCATTCAACGCTTGTTATCATAC
AACACACCAATCACATTGTCAAAAATTGCGATAAAAGGTCCGTATGCCAG
AACTATCATCGATGTGATAAACGAGTTGAACATCGAAAACATTATTTCTC
TTAAAGTATGGTATCCATCATATGATGAGGATGAAAAGCATCTCATTTCT
TTGGTATCGGGTGAGGAATACGAGACAGAGATCAGGATCGATGATAAATT
ATATGGTACAGCATACTTCGAATGCAAGCAAGGAAAACTTACTTTGGAGT
ATCCTCCTTCTTTATTGAACAAAAT Run BLAST on NCBI transcript from alignment at scaffold_269:110810..111984+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056197 ID=TCONS_00056197|Name=TCONS_00056197|organism=Clytia hemisphaerica|type=transcript|length=1175bp|location=Sequence derived from alignment at scaffold_269:110810..111984+ (Clytia hemisphaerica)
GTCACAACGTATATGCAAAACAAGGTGGTCTTTAGTGAAGCAGAAATCAC
ATCGTTGAGGTGTCCGATACCGCTCGAGGAAACTGGCTTTATTACAAAGC
ACCGGAGATCGAATTCTACGGAAGTGACTTTTCAATTCCGTCACTTAATA
CTCCATGAGTATTTGACAGGATTGTATATTTCAATCACACAAGATATCac
acctttttttgaaaataaagaattatCGAGTTGCAAACCAACCATTTTGG
GAATCCAGCGGATGCTGAAAATGGACGAGAATGAACTATttcttgcattt
ttcaaaaacctaCAAACCACCTACAAGAATCTATTTCccaacatttttgg
aaaaagcaAGCCAAAAAGCAAGCCAGAATTTGAAGACTTTATTGGCAGCT
TCATTGAGATGCCGTCATCGATGATCGAAGATGAAAACTCACTTATCATT
GACACTAGAGAAGATGATCACGTTGAATTTCTTACGCTATATAAAGAATC
ACGTGACAACCTTATCTCGAAACGATTTGTGAAAGCAACGATTAAAATTA
GAGAAAATTACAAGGATGTTCGAAACATCGTCAATTTGATAAACGATTTG
AACATAAGAAACATTAGCTCTCTTACAGTATGGAGTCGATCATATGATGA
GGATGAAAAGCATCTCATTTCTTTGGTATCGGGTGAGGAATACAAGACAA
AGATCAGGATCGGTCATTATACATCATACTTTAAATGCGAACAAGGAAAA
CTTACTTTGGAGTGTCCTCCTTCTTTATTGAACAAAATACCAGAAGATTT
GTTACAAAAGTCAACTTCGTTTCATGTTGAAATTGAGCTGATATCCGGTG
TCGGTAATATTGATGGAGTGAAATTATTCATTCAACGCTTGTTATCATAC
AACACACCAATCACATTGTCAAAAATTGCGATAAAAGGTCCGTATGCCAG
AACTATCATCGATGTGATAAACGAGTTGAACATCGAAAACATTATTTCTC
TTAAAGTATGGTATCCATCATATGATGAGGATGAAAAGCATCTCATTTCT
TTGGTATCGGGTGAGGAATACGAGACAGAGATCAGGATCGATGATAAATT
ATATGGTACAGCATACTTCGAATGCAAGCAAGGAAAACTTACTTTGGAGT
ATCCTCCTTCTTTATTGAACAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056197-exon-scaffold_269-1491911889:110810..111984 | TCONS_00056197-exon-scaffold_269-1491911889:110810..111984 | Clytia hemisphaerica | exon |
| TCONS_00056197-exon-scaffold_269-1510915933:110810..111984 | TCONS_00056197-exon-scaffold_269-1510915933:110810..111984 | Clytia hemisphaerica | exon |
| TCONS_00056197-exon-scaffold_269-1575043694:110810..111984 | TCONS_00056197-exon-scaffold_269-1575043694:110810..111984 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:110810..111984 + |
Blast
The following BLAST results are available for this feature:
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