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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056193 ID=TCONS_00056193|Name=TCONS_00056193|organism=Clytia hemisphaerica|type=transcript|length=1089bp
TGACCCTGGTGAACGTTCGTCCACTTGCCAAGTGAaacgctgcgagtggg
aatcaaaACCTCAGTCACCTGTGTAGCATCCAAGGtcaatgactactggt
actataCCACAAGCGACATAACATACCAAAACGACACATCGCACCTATAG
CAAATGAGGTTGTTGCCATGACATTGACGATCGCTGCTCTAGTCGCCGTC
ATCCAATTCTGGTTACGACTTGCCACTTTCCTTCATGGACCTCTAAAATC
ATTTCTACTTCATGTACTCCATAACCTCTCTAATGACCCTTCATACAATG
GTCTACCTCAAGACCCTCAACAACTATATCAAAAACTCTCGACAGATACC
AATCATCAAACGAAGATAAAGAAGTTGAAGAAAGGAAATGTTTTAAAACA
AGATCAAGTGGATGCATTACTACCTCCTACTGGAAACGCAACCGACTCTT
CTCAATTTGATGTTACACTCATCTGTATTTTGATTATCAATTTTACCAAT
CTTCCTGCTCCTCTCAAAGGATGGAAAAACAAAAATCCACCTGCAACTGA
CTTGAGTATCGGTGCATTTGTAATTCGTGCGAGAGAATGGCGAAATTACA
TTCACCACACAGATCCAGATAAAATCAATCAAACAGAATTTAATCAGAAA
TGGATGGAAGGAGAGCAAATCATCAACAATCTTGGCTTCACTTACGACAC
AATGCAGCTGAAAACAATGTCATTGGACCTAAAGTACGAGAATGTTGTCA
AATCTTTGTATTTGTATCTAGAGAGAAAGCAAGAAACACTTTCTAAACAA
CAGACGGCCCTAGCTGATCAACAAACGGCCCTGGTTACCAAGCAGACGAC
CCTGGATACTAAACATACGACCCTATCAAACAAGCAGGCAGCCCTTGAGA
ATCAACAAGCATCATTATCTCAAGATGTTACAGATTTACAAATTTCAACA
actcaaaaaattgatgacgtcgcTCAACAGTTGTCCCTTCATCAAAATCT
CAGTTTGGAGGAAATCAAATCGTTGACCAAAAGATTGGATGAGATTGCCA
ACGTACAGCAACGCATGTGCAAGAACTTGCCAATGATCG Run BLAST on NCBI transcript from alignment at scaffold_269:34113..36323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056193 ID=TCONS_00056193|Name=TCONS_00056193|organism=Clytia hemisphaerica|type=transcript|length=2211bp|location=Sequence derived from alignment at scaffold_269:34113..36323+ (Clytia hemisphaerica)
TGACCCTGGTGAACGTTCGTCCACTTGCCAAGTGAaacgctgcgagtggg
aatcaaaACCTCAGTCACCTGTGTAGCATCCAAGGtcaatgactactggt
actataCCACAAGCGACATAACATACCAAAACGACACATCGCACCTATAG
CAAATGGTATGAAACTATTATATgcacttttttttgtttattctttaTTT
GTCGTTGGTGATGAAAAATAGTTACAAGTACTAATCAAATCGAACATGAC
ATTCGAATATTTACTACGTATAATAGTCAATAATAATTATAAAGAGAGTT
TGCATGAACAATAGATTTTAGCCTTCATGATCTTAAGCTCATCTAATGTA
TCTAAAGAATCAATAGTTTTAAATTCTAACGGTAGCCTTTTCCAAGCTTG
TCCAGCTCAGAAATTAAAAGCAAACTGTGTTCTTGGGATGTGGAAGTTTA
ATTTGAGTGCCTCTTCTGAGACGAGGACGTTTGTTGGGATCTTCATCCTC
GTTTTAAATGGCCCAGCGTAGCGAAAAGGGCCTTTCAAATAGAAGTGTCT
GTGGTTTGTGGTTTGTGGTTCGGTTCGCCAAAAGATTTTGCGATAACAgc
gttattttctttttcaatttcataactcttgatagacggtgacatacctt
tcggtaattagttcttacaaagtaaacaagggatggcgcacaatatctat
ttttcttatctattttatactttataagaatcaaatcaataacttccAAT
GACAACAGGTTGTCTAGGCAAGAGGTCAACACACctctaaaatttttatt
ttcttcaattaAACGGAAAGAAGGGGGTGTTCTCACAGAaccactgggaa
ccctttccacaggaaaaataaccaaaatatcgtccccggtggaaaattat
cctccaatttttgtcccaactgaaaataatcagataagcaaatcctcatc
CCTGCTAAATTTTCtgccttgaaaacaaaagaaattaagtcccctctgtc
ataaaaaatatgggaatatcaatccccatcgagtttcagtccgttatttc
tatccccactggatgaaagaaatcctaccgggtctgtgagaagggggtgt
gaaaGACAATAAAGTCTCTACTGCTAAAATTATACCTGAAATTTGATATC
TATcgttttacaaatttgaaaatgaaacaaatatttttatatacagtaaa
aaaataaaaaggggGAGTTGAGTTTATAGGGAGTTTATGATTTTTACTTG
GTGAATCATTCTATATTCTTTTATTCAGAGGTTGTTGCCATGACATTGAC
GATCGCTGCTCTAGTCGCCGTCATCCAATTCTGGTTACGACTTGCCACTT
TCCTTCATGGACCTCTAAAATCATTTCTACTTCATGTACTCCATAACCTC
TCTAATGACCCTTCATACAATGGTCTACCTCAAGACCCTCAACAACTATA
TCAAAAACTCTCGACAGATACCAATCATCAAACGAAGATAAAGAAGTTGA
AGAAAGGAAATGTTTTAAAACAAGATCAAGTGGATGCATTACTACCTCCT
ACTGGAAACGCAACCGACTCTTCTCAATTTGATGTTACACTCATCTGTAT
TTTGATTATCAATTTTACCAATCTTCCTGCTCCTCTCAAAGGATGGAAAA
ACAAAAATCCACCTGCAACTGACTTGAGTATCGGTGCATTTGTAATTCGT
GCGAGAGAATGGCGAAATTACATTCACCACACAGATCCAGATAAAATCAA
TCAAACAGAATTTAATCAGAAATGGATGGAAGGAGAGCAAATCATCAACA
ATCTTGGCTTCACTTACGACACAATGCAGCTGAAAACAATGTCATTGGAC
CTAAAGTACGAGAATGTTGTCAAATCTTTGTATTTGTATCTAGAGAGAAA
GCAAGAAACACTTTCTAAACAACAGACGGCCCTAGCTGATCAACAAACGG
CCCTGGTTACCAAGCAGACGACCCTGGATACTAAACATACGACCCTATCA
AACAAGCAGGCAGCCCTTGAGAATCAACAAGCATCATTATCTCAAGATGT
TACAGATTTACAAATTTCAACAactcaaaaaattgatgacgtcgcTCAAC
AGTTGTCCCTTCATCAAAATCTCAGTTTGGAGGAAATCAAATCGTTGACC
AAAAGATTGGATGAGATTGCCAACGTACAGCAACGCATGTGCAAGAACTT
GCCAATGATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056193-exon-scaffold_269-1491911889:34113..34268 | TCONS_00056193-exon-scaffold_269-1491911889:34113..34268 | Clytia hemisphaerica | exon |
| TCONS_00056193-exon-scaffold_269-1510915933:34113..34268 | TCONS_00056193-exon-scaffold_269-1510915933:34113..34268 | Clytia hemisphaerica | exon |
| TCONS_00056193-exon-scaffold_269-1575043694:34113..34268 | TCONS_00056193-exon-scaffold_269-1575043694:34113..34268 | Clytia hemisphaerica | exon |
| TCONS_00056193-exon-scaffold_269-1491911889:35391..36323 | TCONS_00056193-exon-scaffold_269-1491911889:35391..36323 | Clytia hemisphaerica | exon |
| TCONS_00056193-exon-scaffold_269-1510915933:35391..36323 | TCONS_00056193-exon-scaffold_269-1510915933:35391..36323 | Clytia hemisphaerica | exon |
| TCONS_00056193-exon-scaffold_269-1575043694:35391..36323 | TCONS_00056193-exon-scaffold_269-1575043694:35391..36323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:34113..36323 + |
Blast
The following BLAST results are available for this feature:
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