TCONS_00056189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056189
Unique NameTCONS_00056189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056189 ID=TCONS_00056189|Name=TCONS_00056189|organism=Clytia hemisphaerica|type=transcript|length=500bp
CAGGTGACATGGGTGGTGAGATCGGTTTGATGTTGGGTGCAAGTTTGCTG
ACATTCTTTGAATTTATTGATTTGTTTGCTTTCCTTGGTTATCACCAGTT
GTTAAGATTACAAAAGAGATGGACTAATGACgatgaagaaaataaagaag
aggAAGAAGTTCAGGGAGAGGACTTTGAGGAGGAAGTGGATTAAGTAGAG
CTTCGGTGAAAGCAGAGAGACTTGGAAGATTTTAGATTTATTTCAACAAA
TTTCAGATTTTAACCAATACCCCTGATTTCATAAGCGTGACACCTGTTAG
GGTTAAAGAAAATTAAACGGTACACCATAATCACACCTAGTGTTTTAAGT
AAGATTCCAGCTACTTATAATTCTATGATAAGATTTATTAAGACCGAGGA
TATTATATTGTAAATTgtattatattttcttattacCTATAGATAGTATT
GCTGTATTTGTCATTTTATAAATTAAGATTGTTAAATTTAATTGGTTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_268:171590..172089

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056189 ID=TCONS_00056189|Name=TCONS_00056189|organism=Clytia hemisphaerica|type=transcript|length=500bp|location=Sequence derived from alignment at scaffold_268:171590..172089 (Clytia hemisphaerica)
CTTAACCAATTAAATTTAACAATCTTAATTTATAAAATGACAAATACAGC
AATACTATCTATAGgtaataagaaaatataatacAATTTACAATATAATA
TCCTCGGTCTTAATAAATCTTATCATAGAATTATAAGTAGCTGGAATCTT
ACTTAAAACACTAGGTGTGATTATGGTGTACCGTTTAATTTTCTTTAACC
CTAACAGGTGTCACGCTTATGAAATCAGGGGTATTGGTTAAAATCTGAAA
TTTGTTGAAATAAATCTAAAATCTTCCAAGTCTCTCTGCTTTCACCGAAG
CTCTACTTAATCCACTTCCTCCTCAAAGTCCTCTCCCTGAACTTCTTcct
cttctttattttcttcatcGTCATTAGTCCATCTCTTTTGTAATCTTAAC
AACTGGTGATAACCAAGGAAAGCAAACAAATCAATAAATTCAAAGAATGT
CAGCAAACTTGCACCCAACATCAAACCGATCTCACCACCCATGTCACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035381XLOC_035381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056189-exon-scaffold_268-1491911889:171590..172089TCONS_00056189-exon-scaffold_268-1491911889:171590..172089Clytia hemisphaericaexon
TCONS_00056189-exon-scaffold_268-1510915933:171590..172089TCONS_00056189-exon-scaffold_268-1510915933:171590..172089Clytia hemisphaericaexon
TCONS_00056189-exon-scaffold_268-1575043694:171590..172089TCONS_00056189-exon-scaffold_268-1575043694:171590..172089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:171590..172089 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.328823	0.38976	0.313486	0.293482	0.30821	0.509024	0	0.568371	2.51357	3.19981	0.0692283	0	4.66764	2.62661	4.536	2.71234	6.3653	4.31218	0.978511	1.52504	4.05779	3.03737	4.01213	1.60569	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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