TCONS_00056180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056180
Unique NameTCONS_00056180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1039

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056180 ID=TCONS_00056180|Name=TCONS_00056180|organism=Clytia hemisphaerica|type=transcript|length=1039bp
gaccgtaaagtgcgttaccgtaggcctgtacataacttgccaaagcaaac
catgcaagtgaaatcttatgtacaggcctacgatatcgcattgaacggtc
taaataaacacttgcttaacctAGCTAAATTGTTGGCACTCATTTGTAAA
TGTCTTCACGGAGTTGTCATCATGGAGCTGATGTCATGGAGTAGGTGGAT
CTTTAGCATATTCAATAACTTTCAACTTAGCTGTTTAACAGATAGAATTC
ATAAGGACATTACTACTACAGTGGTCCACCGACCAATTCAACCAGCAAGC
AAAGAAAATGGGGAGAACAAACAATCATGCCTCGTTACAAGTAGAGCTGC
TCTCATGACATAAACATAAACTTAGTAGGTTTTTAATTGAATCAATCGGT
CTCAAGAGACAAACCGCAAGCCATATCCGAAAACATGTcctccaaaatca
aaacaatagctTTTCTGTGTAACACATTCTTTGCAAACTCTTTGTAATCT
GCAAAGCCTATTATAACATACATGGGAAATGTTTGTGGCTTGTTTTGAAA
GCCTTAGTACTACTAGTATTTGTTTCCTAAAAACCTGCAAAGAATGTTTT
TACTTTATGCGGGACTTTATAACAATCCACTTGAAAAGGTCATAAAATAA
CTATTGTTCTCTATGTTATTCTGACCATCAATCTCTTGTTACTGAAACGA
AAGATGGAATCGATAGGCTCAAAATTGAAATTCGAAAGTATTTTCGCACT
ACTGTTAATATGATCCCAAATTAACGGtactcaatcaatcaatcaatcaa
tcaatcaatcaatcaatcaaaaacttcaacaaaaagaatgaacaacAATT
TCTTTGCAACCAGCAAAATCCACTTTTCTCAACAATTATACTGTTTCGTT
TCTTACATGGAAAACATACAGTTTATAATGGAATTACAATCTCATCGAAG
TATTAAGAGAGGAACTTCTTGCAACCGGAAACCCTCAAGCCTTGATCCAT
TAATTATATAACGACATGTTATAATCATCAATCAATTCG
Run BLAST on NCBI

protein sequence of TCONS_00056180-protein

>TCONS_00056180-protein ID=TCONS_00056180-protein|Name=TCONS_00056180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
DRKVRYRRPVHNLPKQTMQVKSYVQAYDIALNGLNKHLLNLAKLLALICK
CLHGVVIMELMSWSRWIFSIFNNFQLSCLTDRIHKDITTTVVHRPIQPAS
KENGENKQSCLVTSRAALMT
Run BLAST on NCBI

transcript from alignment at scaffold_268:112772..113810

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056180 ID=TCONS_00056180|Name=TCONS_00056180|organism=Clytia hemisphaerica|type=transcript|length=1039bp|location=Sequence derived from alignment at scaffold_268:112772..113810 (Clytia hemisphaerica)
CGAATTGATTGATGATTATAACATGTCGTTATATAATTAATGGATCAAGG
CTTGAGGGTTTCCGGTTGCAAGAAGTTCCTCTCTTAATACTTCGATGAGA
TTGTAATTCCATTATAAACTGTATGTTTTCCATGTAAGAAACGAAACAGT
ATAATTGTTGAGAAAAGTGGATTTTGCTGGTTGCAAAGAAATTgttgttc
attctttttgttgaagtttttgattgattgattgattgattgattgattg
attgattgagtaCCGTTAATTTGGGATCATATTAACAGTAGTGCGAAAAT
ACTTTCGAATTTCAATTTTGAGCCTATCGATTCCATCTTTCGTTTCAGTA
ACAAGAGATTGATGGTCAGAATAACATAGAGAACAATAGTTATTTTATGA
CCTTTTCAAGTGGATTGTTATAAAGTCCCGCATAAAGTAAAAACATTCTT
TGCAGGTTTTTAGGAAACAAATACTAGTAGTACTAAGGCTTTCAAAACAA
GCCACAAACATTTCCCATGTATGTTATAATAGGCTTTGCAGATTACAAAG
AGTTTGCAAAGAATGTGTTACACAGAAAagctattgttttgattttggag
gACATGTTTTCGGATATGGCTTGCGGTTTGTCTCTTGAGACCGATTGATT
CAATTAAAAACCTACTAAGTTTATGTTTATGTCATGAGAGCAGCTCTACT
TGTAACGAGGCATGATTGTTTGTTCTCCCCATTTTCTTTGCTTGCTGGTT
GAATTGGTCGGTGGACCACTGTAGTAGTAATGTCCTTATGAATTCTATCT
GTTAAACAGCTAAGTTGAAAGTTATTGAATATGCTAAAGATCCACCTACT
CCATGACATCAGCTCCATGATGACAACTCCGTGAAGACATTTACAAATGA
GTGCCAACAATTTAGCTaggttaagcaagtgtttatttagaccgttcaat
gcgatatcgtaggcctgtacataagatttcacttgcatggtttgctttgg
caagttatgtacaggcctacggtaacgcactttacggtc

Coding sequence (CDS) from alignment at scaffold_268:112772..113810

>TCONS_00056180 ID=TCONS_00056180|Name=TCONS_00056180|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_268:112772..113810 (Clytia hemisphaerica)
TTATGTCATGAGAGCAGCTCTACTTGTAACGAGGCATGATTGTTTGTTCT
CCCCATTTTCTTTGCTTGCTGGTTGAATTGGTCGGTGGACCACTGTAGTA
GTAATGTCCTTATGAATTCTATCTGTTAAACAGCTAAGTTGAAAGTTATT
GAATATGCTAAAGATCCACCTACTCCATGACATCAGCTCCATGATGACAA
CTCCGTGAAGACATTTACAAATGAGTGCCAACAATTTAGCTaggttaagc
aagtgtttatttagaccgttcaatgcgatatcgtaggcctgtacataaga
tttcacttgcatggtttgctttggcaagttatgtacaggcctacggtaac
gcactttacggtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035372XLOC_035372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056180-exon-scaffold_268-1491911889:112772..113810TCONS_00056180-exon-scaffold_268-1491911889:112772..113810Clytia hemisphaericaexon
TCONS_00056180-exon-scaffold_268-1510915933:112772..113810TCONS_00056180-exon-scaffold_268-1510915933:112772..113810Clytia hemisphaericaexon
TCONS_00056180-exon-scaffold_268-1575043694:112772..113810TCONS_00056180-exon-scaffold_268-1575043694:112772..113810Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056180-proteinTCONS_00056180-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:112772..113810 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0859194	0.169646	0.223827	0.69287	0.173821	0.228315	0.0554599	0.362681	0.180573	0.134525	0.0433502	0.403823	0.354238	0.381894	0.298011	0.160815	0.0330783	0.069973	0.137235	0.386162	1.24372	0.953364	0.395379	0.137704	0.963959	0.658849	0.368086	0.266022	0.0994397	0.407785
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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