|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056176 ID=TCONS_00056176|Name=TCONS_00056176|organism=Clytia hemisphaerica|type=transcript|length=1295bp
cgttaagatgtaataaaagaatcttattactttttctaaagaacgcgtca
tctctatcactttaaatgaccaattagtgaagtatcttgtaaaaactcca
aagcatctctttattttctggtagaaaatggcatgtttgttttattgaaa
gtaatatctttcaaattctccttattatagcctctaaaatagatattttt
caaatattatgcattatgcactTTATGCATTTAGGACCTGCCAGTTTAAA
AAGTGAGGTTTGTTGTGTaaagttttggaaaattataccattttttgcct
taaaagaAAAAGCACCATAAGGGTATAtttcgcccaaatttactcaCAGC
GTATTTTTTTACTTACGCGTAATATTTGGCCGCCCTTACGGTTGTTTTAA
AATCAAGTCCTTCCAACGTCAGTCAGTTTGATCTGACTTCTACATAAAGA
AGTCGAAGACTTTGCAGTGAAAAACAGTGTGGCTGGAGAGAATCGAATCA
TTTTGAATTTGTGTTATTACTCAATTAATTACAACAAAATGCCTATTCAT
GCTCCACGGGAATTGATCAGGATTTTTGATGGAAGGAAAAGCGTTGCTAT
AAACTATGAGTATCTTCCCACTGTTTAATCGGACGCACTGTAGGCTCATT
CAAATACACATTTTATAAGCAACAGCAATTTTCGGCTCAGGCTGGTGTTG
TTAAGGATGCTCTGGATTTCAGTCGAAAATTGACCATAGATTTTTAGCTA
TGCTAGTAAATGTCTagcaaattcaaaaatttgtctttttatcTTATTCA
TTGTATGTCCAAAATACCTCAGTTATATATTCGAATACCATCGGTACACA
TTTTAATGCCAAATAATGCCGAAATTCAGTTTCAGGGCTAGGTTGCTAAG
GCCAAGTtgcttaatattttggccattttcaggGCTGGACCATTAGCAAC
TCGgctgtttataaaaaaatgtgtaaaatttagattaagatttttcaaag
ccCTGTTACTTTGAAACTTTACACTAATTCTTATCAATAGAATCCGATAA
AACAGCTTTTTTACTATTTTGGGATTGGCTGAATTCTGTAGACTGATAAA
CTTAAAGTGTTTCAATTTTaatggattttttttccaacagtACATAGGGT
ATTATTcacaatttttatttcttttgtacATCCAATCGAAAAATAGACGA
TAGATTACCACAAAGATAAGACTCAGGttacttttgtttttcaatACCAT
TTTTGCAAGGAGTGAACTCTACCCATTTGCTAGAAAATaatctta Run BLAST on NCBI transcript from alignment at scaffold_268:54627..55921 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056176 ID=TCONS_00056176|Name=TCONS_00056176|organism=Clytia hemisphaerica|type=transcript|length=1295bp|location=Sequence derived from alignment at scaffold_268:54627..55921 (Clytia hemisphaerica)
taagattATTTTCTAGCAAATGGGTAGAGTTCACTCCTTGCAAAAATGGT
attgaaaaacaaaagtaaCCTGAGTCTTATCTTTGTGGTAATCTATCGTC
TATTTTTCGATTGGATgtacaaaagaaataaaaattgtgAATAATACCCT
ATGTactgttggaaaaaaaatccattAAAATTGAAACACTTTAAGTTTAT
CAGTCTACAGAATTCAGCCAATCCCAAAATAGTAAAAAAGCTGTTTTATC
GGATTCTATTGATAAGAATTAGTGTAAAGTTTCAAAGTAACAGggctttg
aaaaatcttaatctaaattttacacatttttttataaacagcCGAGTTGC
TAATGGTCCAGCcctgaaaatggccaaaatattaagcaACTTGGCCTTAG
CAACCTAGCCCTGAAACTGAATTTCGGCATTATTTGGCATTAAAATGTGT
ACCGATGGTATTCGAATATATAACTGAGGTATTTTGGACATACAATGAAT
AAgataaaaagacaaatttttgaatttgctAGACATTTACTAGCATAGCT
AAAAATCTATGGTCAATTTTCGACTGAAATCCAGAGCATCCTTAACAACA
CCAGCCTGAGCCGAAAATTGCTGTTGCTTATAAAATGTGTATTTGAATGA
GCCTACAGTGCGTCCGATTAAACAGTGGGAAGATACTCATAGTTTATAGC
AACGCTTTTCCTTCCATCAAAAATCCTGATCAATTCCCGTGGAGCATGAA
TAGGCATTTTGTTGTAATTAATTGAGTAATAACACAAATTCAAAATGATT
CGATTCTCTCCAGCCACACTGTTTTTCACTGCAAAGTCTTCGACTTCTTT
ATGTAGAAGTCAGATCAAACTGACTGACGTTGGAAGGACTTGATTTTAAA
ACAACCGTAAGGGCGGCCAAATATTACGCGTAAGTAAAAAAATACGCTGt
gagtaaatttgggcgaaaTATACCCTTATGGTGCTTTTtcttttaaggca
aaaaatggtataattttccaaaactttACACAACAAACCTCACTTTTTAA
ACTGGCAGGTCCTAAATGCATAAagtgcataatgcataatatttgaaaaa
tatctattttagaggctataataaggagaatttgaaagatattactttca
ataaaacaaacatgccattttctaccagaaaataaagagatgctttggag
tttttacaagatacttcactaattggtcatttaaagtgatagagatgacg
cgttctttagaaaaagtaataagattcttttattacatcttaacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056176-exon-scaffold_268-1491911889:54627..55921 | TCONS_00056176-exon-scaffold_268-1491911889:54627..55921 | Clytia hemisphaerica | exon |
| TCONS_00056176-exon-scaffold_268-1510915933:54627..55921 | TCONS_00056176-exon-scaffold_268-1510915933:54627..55921 | Clytia hemisphaerica | exon |
| TCONS_00056176-exon-scaffold_268-1575043694:54627..55921 | TCONS_00056176-exon-scaffold_268-1575043694:54627..55921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_268 | supercontig | scaffold_268:54627..55921 . |
Blast
The following BLAST results are available for this feature:
|
