TCONS_00056174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056174
Unique NameTCONS_00056174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056174 ID=TCONS_00056174|Name=TCONS_00056174|organism=Clytia hemisphaerica|type=transcript|length=321bp
TAATAGCCAAAATAAAGCATATACAGTACAAAAAGTTCATAGGCTATAGG
CTAAAGACTGAGGCCgggataattgaaaattccCCCAAACTATGAGTGAT
TATAAACGTTCCATGTTTGGAAGAGGCTTTTTCTTGAAATCCAATAAAAG
TTCCAACATAAATCCAATctctttttcctattttttgctgGTAAAAAGAA
AGGGAGTCTCACTGTTTTCTTACCAAATATCTGCGAATGCCgcctaaaaa
cgaaagcgaaagtagtTTTTGTCCCTACAAGCTGCGCAcggcagcgcagc
gagcggctccagaatttggct
Run BLAST on NCBI

transcript from alignment at scaffold_268:51183..51503

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056174 ID=TCONS_00056174|Name=TCONS_00056174|organism=Clytia hemisphaerica|type=transcript|length=321bp|location=Sequence derived from alignment at scaffold_268:51183..51503 (Clytia hemisphaerica)
agccaaattctggagccgctcgctgcgctgccgTGCGCAGCTTGTAGGGA
CAAAAactactttcgctttcgtttttaggcGGCATTCGCAGATATTTGGT
AAGAAAACAGTGAGACTCCCTTTCTTTTTACcagcaaaaaataggaaaaa
gagATTGGATTTATGTTGGAACTTTTATTGGATTTCAAGAAAAAGCCTCT
TCCAAACATGGAACGTTTATAATCACTCATAGTTTGGGggaattttcaat
tatcccGGCCTCAGTCTTTAGCCTATAGCCTATGAACTTTTTGTACTGTA
TATGCTTTATTTTGGCTATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035366XLOC_035366Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056174-exon-scaffold_268-1491911889:51183..51503TCONS_00056174-exon-scaffold_268-1491911889:51183..51503Clytia hemisphaericaexon
TCONS_00056174-exon-scaffold_268-1510915933:51183..51503TCONS_00056174-exon-scaffold_268-1510915933:51183..51503Clytia hemisphaericaexon
TCONS_00056174-exon-scaffold_268-1575043694:51183..51503TCONS_00056174-exon-scaffold_268-1575043694:51183..51503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:51183..51503 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.633463	1.05426	1.49241	1.12664	0.854261	0	5.70092	3.19537	2.242	0.470021	5.21936	2.92683	2.51476	3.53373	0.414666	0.358634	0	1.28781	2.48278	0.555991	2.28917	3.64735	1.21879	1.58696	0.642807	2.42545	4.99086	5.08474	1.04784	0.793113
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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