TCONS_00056173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056173
Unique NameTCONS_00056173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056173 ID=TCONS_00056173|Name=TCONS_00056173|organism=Clytia hemisphaerica|type=transcript|length=880bp
tattttaaaaaagtgttatttttaaacaaagaatttatttgtatttttta
tattgtACTTTTTGAAGAGTCTCGATTTATTAGAGCTTTACTttgtactt
ttttttactaGCTCAAGTTATTTGTACGTATTTTTTACATTTAGGctgta
aataatatttttatgttAATAATTTATCAACAACAGAAAAGATAATTGAA
ATTATCTTATTAATAATACCGGTATTACCTGAATTCTGTTAATTAAGAAG
CtagtaaaatttgaaattccgATTGTGTTTTGATTAATTTCTCATCCGCA
TCCGAGTTATCTGGATGTGGGAACGACATTTTCCGTATTGTTAATCTCAA
ATTTACGAGTTTGTGAAATTTGACATCCCGATCGTGTTTTGCTCGATTCC
GCATCCGAATTGTGATTTTAACTGTATCTGTAATAGCCTTTTTCCGTATT
GTTAATCTCAAATTTACGAGTTTGTGAGATTTGACATCCCAATCGTGTTT
TACTTGATTCCGCATCAGAATTATGATTTTATCTGTATCTGAAAATGCCT
TTTTCCGTATTGTTAATCTCAAATTTACGAGTTTGTGAGATTTGACATCC
CAATTGTGTTTTACTTAATTCCGCATCCGAATTATGATTTTATCTGTATC
TGAAAATGCCTTTTTCCGTATTGTTAATCTCAAATTTACGAGTTTGTGAA
ATTTGACTTCCCAATCATGTTTTGCTCGAATCCACATACGGTTTTATACC
TTTGTGATATTGGAATTCACAACCTACGTACAAGCTGCACAATCCCAAGT
TTGGGGCTGGTTTGGGAAATACATGATTTTCCGGATCCGGAAGTACGTAT
TTCCCAAACATtgggatttgaagatttttt
Run BLAST on NCBI

transcript from alignment at scaffold_268:5331..6210

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056173 ID=TCONS_00056173|Name=TCONS_00056173|organism=Clytia hemisphaerica|type=transcript|length=880bp|location=Sequence derived from alignment at scaffold_268:5331..6210 (Clytia hemisphaerica)
aaaaaatcttcaaatcccaATGTTTGGGAAATACGTACTTCCGGATCCGG
AAAATCATGTATTTCCCAAACCAGCCCCAAACTTGGGATTGTGCAGCTTG
TACGTAGGTTGTGAATTCCAATATCACAAAGGTATAAAACCGTATGTGGA
TTCGAGCAAAACATGATTGGGAAGTCAAATTTCACAAACTCGTAAATTTG
AGATTAACAATACGGAAAAAGGCATTTTCAGATACAGATAAAATCATAAT
TCGGATGCGGAATTAAGTAAAACACAATTGGGATGTCAAATCTCACAAAC
TCGTAAATTTGAGATTAACAATACGGAAAAAGGCATTTTCAGATACAGAT
AAAATCATAATTCTGATGCGGAATCAAGTAAAACACGATTGGGATGTCAA
ATCTCACAAACTCGTAAATTTGAGATTAACAATACGGAAAAAGGCTATTA
CAGATACAGTTAAAATCACAATTCGGATGCGGAATCGAGCAAAACACGAT
CGGGATGTCAAATTTCACAAACTCGTAAATTTGAGATTAACAATACGGAA
AATGTCGTTCCCACATCCAGATAACTCGGATGCGGATGAGAAATTAATCA
AAACACAATcggaatttcaaattttactaGCTTCTTAATTAACAGAATTC
AGGTAATACCGGTATTATTAATAAGATAATTTCAATTATCTTTTCTGTTG
TTGATAAATTATTaacataaaaatattatttacagCCTAAATGTAAAAAA
TACGTACAAATAACTTGAGCtagtaaaaaaaagtacaaAGTAAAGCTCTA
ATAAATCGAGACTCTTCAAAAAGTacaatataaaaaatacaaataaattc
tttgtttaaaaataacacttttttaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035365XLOC_035365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056173-exon-scaffold_268-1491911889:5331..6210TCONS_00056173-exon-scaffold_268-1491911889:5331..6210Clytia hemisphaericaexon
TCONS_00056173-exon-scaffold_268-1510915933:5331..6210TCONS_00056173-exon-scaffold_268-1510915933:5331..6210Clytia hemisphaericaexon
TCONS_00056173-exon-scaffold_268-1575043694:5331..6210TCONS_00056173-exon-scaffold_268-1575043694:5331..6210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:5331..6210 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105746	0.206238	0.299327	0.117138	0.0713021	0.0563439	0.20393	0.127278	0	0.0551886	0.374972	0.0352131	0.105492	0.0365183	0.090069	0.0966578	0.0396915	0.406825	0.22482	0.0588146	0.0511206	0.0748045	0	0	0.283837	0.15199	0.217498	0.154746	0.176055	0.179372
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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