|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056169 ID=TCONS_00056169|Name=TCONS_00056169|organism=Clytia hemisphaerica|type=transcript|length=1869bp
GTGAAAACTAAGGTCTTTTAAAGCTGGGCGTGCAATATAATTATTGAGTT
TCAATAGTTCATTCAAGCTCTCCtggttgatttaaaaaaaagctaatATA
AACTGATTTGACCAAGGTTTGTGCGTTCGAGACAAATCAGAAAGAAGAGA
AAGGAGAGAGGAGATGCTAATCTATCGGAAAAGATAAACCAACAATGGAA
AAGAATAGATGGAGGTAGTAATTTGTTTTCTAATGAGGTGTTGTAACTCG
TTACCGCCTTCCATGAAAGCTATTCAATTCAGATTACGTATTCAATCTTT
TGTATGTGACGTCATGTGGATACTAGAATCAGGGGGTCATTCGATTGTTG
TATAAAAGCATCGAATTATGGAAGATTGGAATCAATTGACTAGCGATTTT
CAAAACGAGTTCATCTCGTCAACACAGCGACTTTACTAGCAGCAGCAATC
ATAATTCTTGTCTTTTCAGCACATTTTCTTCTTCGACATTTACTacaaat
caaactttgaagagtgttcaaaagaaaaagaattgtgACTATCATTATAA
CGAAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGACACAATGGCGT
ATACTAGTGGACCTGTGCTTTATCACCAACGAGAAGTGGCCACTGAGGAA
TTACTGCGACCAAAGATTGTGACTCCATTACCTCTTCAGTCTTCTGTTAA
AGTTGGCTCCGAATTCAAATTACTATGTCTTTTGACCGGTTACCCAACCA
TCGAGATCAATTGGTATTTGAACGGAGATCTTCTGGTGGAGACTGAAGAC
GGACGAATTCGTTTTGATAACCATCAAAGATTGCTGGTGATTCGAGACTT
GAAACCATCAGATGCTGGTTCAATTACCTTTCATGCAACCAACAAATACG
GAGAAGTAACGTGTAGTTCTCATTTGCAAGTCTTAATGACCAAACGTGAG
AAATTTGCGCATTCAAGGTATGGGAATTATTCGTTAAATTCGAGTAACTC
ACCAAAGCCAATCCGACGTTTGTTACATGCGCTGAATAGGATGAAATCGT
TTTAGAGGGAAGACAGCAGATGAAGGTGATATCAGATTTTCAGAAGGAAA
GTTGACCTTTGCAATCGAGAATCCACCATAGAATCATATAACGCTTTTCA
CCGAATATTTACAACGGCAACAAAGACTTTCTTAAGAGAGTGACAATTCA
CTAAATAACGACATCGCATCTCAAAAACTTTGACTTGAGACAATAAGGAA
TATCCATAGGATGTATAATGAGTGATTCTATATCGTCATGCTACTCCACA
CGATTATGATTCTTACCCACCATGCATAAACTAACCTAACAAATCCCGGG
ATTGAAAAGATTTAAAACGAACTGAAAAGTGAATAAAATGGATAATAAAG
AAACCGCAAACCTCCAACCGTGCTATCTGACGTGAAAGGCGAACGAAGCT
TTATGTTACCCAAAGTTTGGCAATGTAAAATTGGGTGTAAAGCTTCGTGC
CACTAGCTGAGACAACTTCAATGGAGGGTGCAAGGTTGACGTAAAGCCTT
GACCACACGCCGAGTGCATTCTAAAAGCGGGTGCCTCGATTCTGACGTAT
ATGCAACGAACTATAGAAAAGACACctgctgaaaaattgaaagaatagAC
TAATCACTGGGTGtgtttgggtttgtttttaGCACCCAGCACATCTTATT
ATTGTTTAAGTAAGACAATAAAAGAGCTTCTAAAATAATTAATAACGAAG
GCTCAATAAAGACAATGGGGCCCTGTTGAGGGCCATAAATACCTTACATA
CAAAAAAGAAGGGTCCTTTCGGGGACAAAAAAAAGCtattaataaacaaa
aaaacttattttttccgNA Run BLAST on NCBI transcript from alignment at scaffold_268:164265..166754- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056169 ID=TCONS_00056169|Name=TCONS_00056169|organism=Clytia hemisphaerica|type=transcript|length=2490bp|location=Sequence derived from alignment at scaffold_268:164265..166754- (Clytia hemisphaerica)
GTGAAAACTAAGGTCTTTTAAAGCTGGGCGTGCAATATAATTATTGAGTT
TCAATAGTTCATTCAAGCTCTCCTGGTTGATTTAAAAAAAAGCTAATATA
AACTGATTTGACCAAGGTTTGTGCGTTCGAGACAAATCAGAAAGAAGAGA
AAGGAGAGAGGAGATGCTAATCTATCGGAAAAGATAAACCAACAATGGAA
AAGAATAGATGGAGGTAGTAATTTGTTTTCTAATGAGGTGTTGTAACTCG
TTACCGCCTTCCATGAAAGCTATTCAATTCAGATTACGTATTCAATCTTT
TGTATGTGACGTCATGTGGATACTAGAATCAGGGGGTCATTCGATTGTTG
TATAAAAGCATCGAATTATGGAAGATTGGAATCAATTGACTAGCGATTTT
CAAAACGAGTTCATCTCGTCAACACAGCGACTTTACTAGCAGCAGCAATC
ATAATTCTTGTCTTTTCAGCACATTTTCTTCTTCGACATTTACTACAAAT
CAAACTTTGAAGAGTGTTCAAAAGAAAAAGAATTGTGACTATCATTATAA
CGAAAGATCTGATAAAAAAACTGCAAGCAAAATGTGTGGTAAGTGTCATG
TTATCTTTTGTGATCTTTAAATCGCTCCTCAGTCATCAGTTTCGTTACTC
TGAAGGGATACTAATCATAATCATATAATTACTGCAACTACTTGGCTCAA
GAGCTTTTTGTCTAACAGGATTATTATTTGGGCTGGTTATAGCGTTCTAA
GTATACTATGTCACGGGACGAATGAAAGATTCAACTCTCAGAACTTAAAA
TTGCGTGGATGAAATCATTCGTTATATTCTACAGTATATCCGCACCTGGA
CTTCAACTTCTATTCATGTCCAACTTATTGATGAATGTTGTTTTATCAAT
GGTTGAAAGTGTGAATAGTATTCGTATGAACGTGTGGTATTAAGTTAATC
AAGTGATTATTCCACTTCTACAGCTTAAGAAATCACCTTATAAAACTTTA
GATGATGTTAAAATAGTGCTGTAATAAGAAACCTATTAACAAATCGCATG
AGCAAGCTCGTTTTTTGTATGTTTCAGTTCGTGCCTGTATGAAGAAAATA
ACGGTTCGCAGAGAGCTTTTTAGCGTTTATTTTTAGTTTTGCAAGCGAGG
GTGAGGTCTGCCAACCCATTGTACACAGAAGTCTTACATCTTTACCATTT
CTTTTGTAGACACAATGGCGTATACTAGTGGACCTGTGCTTTATCACCAA
CGAGAAGTGGCCACTGAGGAATTACTGCGACCAAAGATTGTGACTCCATT
ACCTCTTCAGTCTTCTGTTAAAGTTGGCTCCGAATTCAAATTACTATGTC
TTTTGACCGGTTACCCAACCATCGAGATCAATTGGTATTTGAACGGAGAT
CTTCTGGTGGAGACTGAAGACGGACGAATTCGTTTTGATAACCATCAAAG
ATTGCTGGTGATTCGAGACTTGAAACCATCAGATGCTGGTTCAATTACCT
TTCATGCAACCAACAAATACGGAGAAGTAACGTGTAGTTCTCATTTGCAA
GTCTTAATGACCAAACGTGAGAAATTTGCGCATTCAAGGTATGGGAATTA
TTCGTTAAATTCGAGTAACTCACCAAAGCCAATCCGACGTTTGTTACATG
CGCTGAATAGGATGAAATCGTTTTAGAGGGAAGACAGCAGATGAAGGTGA
TATCAGATTTTCAGAAGGAAAGTTGACCTTTGCAATCGAGAATCCACCAT
AGAATCATATAACGCTTTTCACCGAATATTTACAACGGCAACAAAGACTT
TCTTAAGAGAGTGACAATTCACTAAATAACGACATCGCATCTCAAAAACT
TTGACTTGAGACAATAAGGAATATCCATAGGATGTATAATGAGTGATTCT
ATATCGTCATGCTACTCCACACGATTATGATTCTTACCCACCATGCATAA
ACTAACCTAACAAATCCCGGGATTGAAAAGATTTAAAACGAACTGAAAAG
TGAATAAAATGGATAATAAAGAAACCGCAAACCTCCAACCGTGCTATCTG
ACGTGAAAGGCGAACGAAGCTTTATGTTACCCAAAGTTTGGCAATGTAAA
ATTGGGTGTAAAGCTTCGTGCCACTAGCTGAGACAACTTCAATGGAGGGT
GCAAGGTTGACGTAAAGCCTTGACCACACGCCGAGTGCATTCTAAAAGCG
GGTGCCTCGATTCTGACGTATATGCAACGAACTATAGAAAAGACACCTGC
TGAAAAATTGAAAGAATAGACTAATCACTGGGTGTGTTTGGGTTTGTTTT
TAGCACCCAGCACATCTTATTATTGTTTAAGTAAGACAATAAAAGAGCTT
CTAAAATAATTAATAACGAAGGCTCAATAAAGACAATGGGGCCCTGTTGA
GGGCCATAAATACCTTACATACAAAAAAGAAGGGTCCTTTCGGGGACAAA
AAAAAGCTATTAATAAACAAAAAAACTTATTTTTTCCGNA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056169-exon-scaffold_268-1575043694:166167..166754 | TCONS_00056169-exon-scaffold_268-1575043694:166167..166754 | Clytia hemisphaerica | exon |
| TCONS_00056169-exon-scaffold_268-1575043694:164265..165545 | TCONS_00056169-exon-scaffold_268-1575043694:164265..165545 | Clytia hemisphaerica | exon |
| TCONS_00056169-exon-scaffold_268-1510915933:166167..166754 | TCONS_00056169-exon-scaffold_268-1510915933:166167..166754 | Clytia hemisphaerica | exon |
| TCONS_00056169-exon-scaffold_268-1510915933:164265..165545 | TCONS_00056169-exon-scaffold_268-1510915933:164265..165545 | Clytia hemisphaerica | exon |
| TCONS_00056169-exon-scaffold_268-1491911889:166167..166754 | TCONS_00056169-exon-scaffold_268-1491911889:166167..166754 | Clytia hemisphaerica | exon |
| TCONS_00056169-exon-scaffold_268-1491911889:164265..165545 | TCONS_00056169-exon-scaffold_268-1491911889:164265..165545 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_268 | supercontig | scaffold_268:164265..166754 - |
Blast
The following BLAST results are available for this feature:
|
