TCONS_00056159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056159
Unique NameTCONS_00056159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056159 ID=TCONS_00056159|Name=TCONS_00056159|organism=Clytia hemisphaerica|type=transcript|length=1726bp
CACTTATCCAGGCAACATGGGTGTTACACGTGACTATTCTCTGTATTCTG
GGTATAAATATGAGTCGATCACTTGACCAAAGCATCACTACTTTTGAAGG
AGTTCTGAAGACTCGCACATTAGCTGATACATCTACCACCTCAAAAAAAT
GGACATGACCTCATTCAATGTTGGCGCTCTGATTTTCAACAAAGAACTTC
CTTTTGTCGTGGAAGTTGATTGTGACATTGATGATCACAAATTCTCCATT
CGTGGCAAAGGTGTTGGCAATGCTGAGAAAGGATTGATGGTTGGCAAATA
TGTTGTCTCCGAAGGTGAATTGCCATGCTCATGGTCAGCAATCACTCATA
ATTTCCAATACGGACAAGTTTGTTTCACCCGTTACCCAAAAGATATACCT
GATCACGTCAAAAGTCTGTTCCCAGAGGGTTACGTCCAAACACGACACAG
TCATTTCGTCGATGATGGAGAATATACGTCCGTACACACGTTAACGTACG
AAAACGGAGTGATTTACAACCGCGTCAAAGTTAACGGTGGTGGTTTTAAA
CCCGATGGTAATGTTTTTGGTAAACGTCTTCGGGAAGTGGAACCTGATAT
CTGTTCTGTCTATTTCCCGGGAAAAGATGGATACAACTGTGAATTTATCA
AGCTTTCGGAGACGGTAGATGGCGATTATCAAGCAATCCGTATTGACCAA
GTGATCAGACCTCTTTCTGACGGACCCTCCCTTCCAATGACCAAGCTTTA
TCATCATTACAAATTCGAATACAGTAAGGATGCCAACGAAACGAGGGAAC
ATATCATCATGAAGGAACAGGTTCATGCTAGTCACCATACCTCTAAATAA
TGAGACTTTAATAATAGTTGATTGTCATTAATTATATGATATTAAAGTTT
TATATATCTATTATATAATCTGTTTGACTCATACTTAATTTTCATAgttg
aaataaattttatatattttgcacATGATTTACCCCTCAAAAACCATTCC
ACCGTCAATTTTATCTATCCAAAATTTTGAGAGATGATTGGAAACATGAT
ATTCTGAATTTGTACTAAAGTTCCTTTAACTATTGTAcgtaaaaatctga
aaaaagggtgtttttaaaaacacccGGTATAGGCCATTCCAGGGTCAAAg
ggaatcatgggtaatcagataTGATGATAGTAATTGTATTCTTTTAGTAt
ttgaactgattttgacccGTCGCTACATCTCTAAGCTAACATTTGTACTC
AAACAATAATGAAAAGGCAAAATGGGGTTCACATTACTTTATTAAAGTGG
TCTTGGTTATAAATCATTTCATAATCGCCCCTTCTTTAAACGCCCCGTCG
AATGAACGCTTCttctaaaaaaaactaatattcTTAGATGTACTAATACA
CCCATGTCTCGATTCTCGAGTAGGTGTTGAgtacatagatttataaagcc
ggAAGGGCTAGATGTTGTGCTTATGCTGAAAAGTGCGCCGAGAATAGGTA
GAAAATCCTTCCTAGAACACGTGACATTACAAAAGAATTTTAGCGCTTGA
CTAATCAGAAGCTTCGctggtttttgaaaacaatagcagcaatatttttt
gcgaagttcacttttttttgccagGAAGAGCTTAGATTACTCCATCTCac
tccttcgggctttacagtaATCTGTGGTTGAGCACCCAGGGATTTTATAG
AAGATAATTTTTATTTGTGATGAAac
Run BLAST on NCBI

protein sequence of TCONS_00056159-protein

>TCONS_00056159-protein ID=TCONS_00056159-protein|Name=TCONS_00056159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MDMTSFNVGALIFNKELPFVVEVDCDIDDHKFSIRGKGVGNAEKGLMVGK
YVVSEGELPCSWSAITHNFQYGQVCFTRYPKDIPDHVKSLFPEGYVQTRH
SHFVDDGEYTSVHTLTYENGVIYNRVKVNGGGFKPDGNVFGKRLREVEPD
ICSVYFPGKDGYNCEFIKLSETVDGDYQAIRIDQVIRPLSDGPSLPMTKL
YHHYKFEYSKDANETREHIIMKEQVHASHHTSK
Run BLAST on NCBI

transcript from alignment at scaffold_268:41208..44450-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056159 ID=TCONS_00056159|Name=TCONS_00056159|organism=Clytia hemisphaerica|type=transcript|length=3243bp|location=Sequence derived from alignment at scaffold_268:41208..44450- (Clytia hemisphaerica)
CACTTATCCAGGCAACATGGGTGTTACACGTGACTATTCTCTGTATTCTG
GGTATAAATATGAGTCGATCACTTGACCAAAGCATCACTACTTTTGAAGG
AGTTCTGAAGACTCGCACATTAGCTGATACATCTACCACCTCAAAAAGTA
AGTCACATTACATATCTCTTTTTACGCAACATGTTCCTCTATTTTTTCAA
CAGTGTCCTCTTACTGAGCTACTTTGAAACCAACGAGTTTGAAGCAAGTT
TCAACCTTTTAATCATCTATACCAAAGTCGATAGTTGTTGCAAAAAAGAT
TGACCTTCCACACCATCATCCGTAAACACAATAATGGGGGATTGGTACGA
GTTTACCAGGAAGGGATGACATCAGAAATATCTGTCTAAGAGAATCAATG
CAGCAACTTCAGATAGTAATGAGATTAATTAGTGTGGTCAATCCTACCTG
GTAAACTACAACCCAGTCTACACATAGTAACGGCAAAATTCAAAAAAAGT
CTTTCGCAATGTGGTTCTAGAATGGACATGACCTCATTCAATGTTGGCGC
TCTGATTTTCAACAAAGAACTTCCTTTTGTCGTGGAAGTTGATTGTGACA
TTGATGATCACAAATTCTCCATTCGTGGCAAAGGTGTTGGCAATGCTGAG
AAAGGATTGATGGTTGGCAAATATGTTGTCTCCGAAGGTGAATTGCCATG
CTCATGGTCAGCAATCACTCATAATTTCCAATACGGACAAGTGTAAGTAG
AGCTTTATTTTAATTGTACCACAACTCTAGTGTCAGGTCCTTCACAATGT
GAGCAAAATTGACTTGCTTAAACTTTAATTTGATCTAGATGGAATTTAAA
GCTCGTTGGTTAGAGTAGGACCTATCCTTTTCATTTTGGGTGCTTTGGTT
TAAATGTTAGCACAGAAAGAGTTTAAATACGTAATGTAATACACAATGTG
TAAAACAAATCTTGGAAAGTTTCTCATTTACAAACGCCGATGGTGCATTA
TGACAAAAGAATTATGTGTTTAAAAAAGACTTTTCAAGGTCACTTAGACT
CGATCGAAAATGTCAATCGTAAATTTTAAATTTTCTCTTCCCCACGTATT
TAGTTGTTTCACCCGTTACCCAAAAGATATACCTGATCACGTCAAAAGTC
TGTTCCCAGAGGGTTACGTCCAAACACGACACAGTCATTTCGTCGATGAT
GGAGAATATACGTCCGTACACACGTTAACGTACGAAAACGGAGTGATTTA
CAACCGCGTCAAAGTTAACGGTGGTGGTTTTAAACCCGATGGTAATGTTT
TTGGTAAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCTGTCTATTTC
CCGGGAAAAGATGGATACAACTGTGAATTTATCAAGGTACTGAAATTTCG
ACAATTCTATTCTTATACTTTCAGGAAAATGTTTTTTATCTGTGCAGTAT
GACTGACAATAATAATTCAGTTTCATTTGAATGTTTCAGAAGAGAATAGA
CTGTCATGATCTCTAAGAGGTTTTTTTCTAAATAAGTTCTGAGTTGAGAA
ATCTAGCTAGTCCAGTGGTGCAAAAAAAATGCATTTTTTTAACCAGTAGC
GTGGTGGGTCGATTAAAATTCGGGCAAATTATTTTATAAGATTTAGATTT
TGGCGCCCCCTATGAAAAGAAAATATATATTTTTCTAAATTGCGCGAGCG
AAGTNATTTTATAAGATTTAGATTTTGGCGCCCCCTATGAAAAGAAAATA
TATATTTTTTTAAATTGCGCGAGCGAAGTGAGCACGAAAACTTTGAGTAT
TTTCTTTCGTTTTGACCGAAAAATGCCATATCTAAGGTATAAAAGAGCAA
AAGGGCGCCGAAATTAGTAATCAGAGGCGTCTTTTTGCACCCTAAGAAAT
TCGGCCGCTGGGAGAGGGCTCCCCCTGTCACCACGCTACTGTTTACAACA
TGCGTTTAGTCAAAGTTTAAGATTGGAGCATAATAAGAGCTGAAACTTGT
ACATGTAGTCATCATAATCTGGTTTATATCCTTATCTTTCACAGCTTTCG
GAGACGGTAGATGGCGATTATCAAGCAATCCGTATTGACCAAGTGATCAG
ACCTCTTTCTGACGGACCCTCCCTTCCAATGACCAAGCTTTATCATCATT
ACAAATTCGAATACAGTAAGGATGCCAACGAAACGAGGGAACATATTATC
ATGAAGGAACAAGTCCACGCTAGTCACCATACCTCTAAATAATGAGATAT
CAACTTTTATTATTGGATTCTCAAGTTTAATCGTTGTTTGTCATTAATTA
TATGANCACAAGGGAACATATCATCATGAAGGAACAGGTTCATGCTAGTC
ACCATACCTCTAAATAATGAGACTTTAATAATAGTTGATTGTCATTAATT
ATATGATATTAAAGTTTTATATATCTATTATATAATCTGTTTGACTCATA
CTTAATTTTCATAGTTGAAATAAATTTTATATATTTTGCACATGATTTAC
CCCTCAAAAACCATTCCACCGTCAATTTTATCTATCCAAAATTTTGAGAG
ATGATTGGAAACATGATATTCTGAATTTGTACTAAAGTTCCTTTAACTAT
TGTACGTAAAAATCTGAAAAAAGGGTGTTTTTAAAAACACCCGGTATAGG
CCATTCCAGGGTCAAAGGGAATCATGGGTAATCAGATATGATGATAGTAA
TTGTATTCTTTTAGTATTTGAACTGATTTTGACCCGTCGCTACATCTCTA
AGCTAACATTTGTACTCAAACAATAATGAAAAGGCAAAATGGGGTTCACA
TTACTTTATTAAAGTGGTCTTGGTTATAAATCATTTCATAATCGCCCCTT
CTTTAAACGCCCCGTCGAATGAACGCTTCTTCTAAAAAAAACTAATATTC
TTAGATGTACTAATACACCCATGTCTCGATTCTCGAGTAGGTGTTGAGTA
CATAGATTTATAAAGCCGGAAGGGCTAGATGTTGTGCTTATGCTGAAAAG
TGCGCCGAGAATAGGTAGAAAATCCTTCCTAGAACACGTGACATTACAAA
AGAATTTTAGCGCTTGACTAATCAGAAGCTTCGCTGGTTTTTGAAAACAA
TAGCAGCAATATTTTTTGCGAAGTTCACTTTTTTTTGCCAGGAAGAGCTT
AGATTACTCCATCTCACTCCTTCGGGCTTTACAGTAATCTGTGGTTGAGC
ACCCAGGGATTTTATAGAAGATAATTTTTATTTGTGATGAAAC

Coding sequence (CDS) from alignment at scaffold_268:41208..44450-

>TCONS_00056159 ID=TCONS_00056159|Name=TCONS_00056159|organism=Clytia hemisphaerica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_268:41208..44450- (Clytia hemisphaerica)
ATATCATCATGAAGGAACAGGTTCATGCTAGTCACCATACCTCTAAATAA
CTTTCGGAGACGGTAGATGGCGATTATCAAGCAATCCGTATTGACCAAGT
GATCAGACCTCTTTCTGACGGACCCTCCCTTCCAATGACCAAGCTTTATC
ATCATTACAAATTCGAATACAGTAAGGATGCCAACGAAACGAGGGAACTT
GTTTCACCCGTTACCCAAAAGATATACCTGATCACGTCAAAAGTCTGTTC
CCAGAGGGTTACGTCCAAACACGACACAGTCATTTCGTCGATGATGGAGA
ATATACGTCCGTACACACGTTAACGTACGAAAACGGAGTGATTTACAACC
GCGTCAAAGTTAACGGTGGTGGTTTTAAACCCGATGGTAATGTTTTTGGT
AAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCTGTCTATTTCCCGGG
AAAAGATGGATACAACTGTGAATTTATCAAGATGGACATGACCTCATTCA
ATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCTTTTGTCGTGGAAGTT
GATTGTGACATTGATGATCACAAATTCTCCATTCGTGGCAAAGGTGTTGG
CAATGCTGAGAAAGGATTGATGGTTGGCAAATATGTTGTCTCCGAAGGTG
AATTGCCATGCTCATGGTCAGCAATCACTCATAATTTCCAATACGGACAA
GTATATCATCATGAAGGAACAGGTTCATGCTAGTCACCATACCTCTAAAT
AACTTTCGGAGACGGTAGATGGCGATTATCAAGCAATCCGTATTGACCAA
GTGATCAGACCTCTTTCTGACGGACCCTCCCTTCCAATGACCAAGCTTTA
TCATCATTACAAATTCGAATACAGTAAGGATGCCAACGAAACGAGGGAAC
TTGTTTCACCCGTTACCCAAAAGATATACCTGATCACGTCAAAAGTCTGT
TCCCAGAGGGTTACGTCCAAACACGACACAGTCATTTCGTCGATGATGGA
GAATATACGTCCGTACACACGTTAACGTACGAAAACGGAGTGATTTACAA
CCGCGTCAAAGTTAACGGTGGTGGTTTTAAACCCGATGGTAATGTTTTTG
GTAAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCTGTCTATTTCCCG
GGAAAAGATGGATACAACTGTGAATTTATCAAGATGGACATGACCTCATT
CAATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCTTTTGTCGTGGAAG
TTGATTGTGACATTGATGATCACAAATTCTCCATTCGTGGCAAAGGTGTT
GGCAATGCTGAGAAAGGATTGATGGTTGGCAAATATGTTGTCTCCGAAGG
TGAATTGCCATGCTCATGGTCAGCAATCACTCATAATTTCCAATACGGAC
AAGTATATCATCATGAAGGAACAGGTTCATGCTAGTCACCATACCTCTAA
ATAACTTTCGGAGACGGTAGATGGCGATTATCAAGCAATCCGTATTGACC
AAGTGATCAGACCTCTTTCTGACGGACCCTCCCTTCCAATGACCAAGCTT
TATCATCATTACAAATTCGAATACAGTAAGGATGCCAACGAAACGAGGGA
ACTTGTTTCACCCGTTACCCAAAAGATATACCTGATCACGTCAAAAGTCT
GTTCCCAGAGGGTTACGTCCAAACACGACACAGTCATTTCGTCGATGATG
GAGAATATACGTCCGTACACACGTTAACGTACGAAAACGGAGTGATTTAC
AACCGCGTCAAAGTTAACGGTGGTGGTTTTAAACCCGATGGTAATGTTTT
TGGTAAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCTGTCTATTTCC
CGGGAAAAGATGGATACAACTGTGAATTTATCAAGATGGACATGACCTCA
TTCAATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCTTTTGTCGTGGA
AGTTGATTGTGACATTGATGATCACAAATTCTCCATTCGTGGCAAAGGTG
TTGGCAATGCTGAGAAAGGATTGATGGTTGGCAAATATGTTGTCTCCGAA
GGTGAATTGCCATGCTCATGGTCAGCAATCACTCATAATTTCCAATACGG
ACAAGTATATCATCATGAAGGAACAGGTTCATGCTAGTCACCATACCTCT
AAATAACTTTCGGAGACGGTAGATGGCGATTATCAAGCAATCCGTATTGA
CCAAGTGATCAGACCTCTTTCTGACGGACCCTCCCTTCCAATGACCAAGC
TTTATCATCATTACAAATTCGAATACAGTAAGGATGCCAACGAAACGAGG
GAACTTGTTTCACCCGTTACCCAAAAGATATACCTGATCACGTCAAAAGT
CTGTTCCCAGAGGGTTACGTCCAAACACGACACAGTCATTTCGTCGATGA
TGGAGAATATACGTCCGTACACACGTTAACGTACGAAAACGGAGTGATTT
ACAACCGCGTCAAAGTTAACGGTGGTGGTTTTAAACCCGATGGTAATGTT
TTTGGTAAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCTGTCTATTT
CCCGGGAAAAGATGGATACAACTGTGAATTTATCAAGATGGACATGACCT
CATTCAATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCTTTTGTCGTG
GAAGTTGATTGTGACATTGATGATCACAAATTCTCCATTCGTGGCAAAGG
TGTTGGCAATGCTGAGAAAGGATTGATGGTTGGCAAATATGTTGTCTCCG
AAGGTGAATTGCCATGCTCATGGTCAGCAATCACTCATAATTTCCAATAC
GGACAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035357XLOC_035357Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056159-exon-scaffold_268-1575043694:44304..44450TCONS_00056159-exon-scaffold_268-1575043694:44304..44450Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1575043694:43709..43930TCONS_00056159-exon-scaffold_268-1575043694:43709..43930Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1575043694:43065..43347TCONS_00056159-exon-scaffold_268-1575043694:43065..43347Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1575043694:42259..42406TCONS_00056159-exon-scaffold_268-1575043694:42259..42406Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1575043694:41208..42133TCONS_00056159-exon-scaffold_268-1575043694:41208..42133Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1510915933:44304..44450TCONS_00056159-exon-scaffold_268-1510915933:44304..44450Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1510915933:43709..43930TCONS_00056159-exon-scaffold_268-1510915933:43709..43930Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1510915933:43065..43347TCONS_00056159-exon-scaffold_268-1510915933:43065..43347Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1510915933:42259..42406TCONS_00056159-exon-scaffold_268-1510915933:42259..42406Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1510915933:41208..42133TCONS_00056159-exon-scaffold_268-1510915933:41208..42133Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1491911889:44304..44450TCONS_00056159-exon-scaffold_268-1491911889:44304..44450Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1491911889:43709..43930TCONS_00056159-exon-scaffold_268-1491911889:43709..43930Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1491911889:43065..43347TCONS_00056159-exon-scaffold_268-1491911889:43065..43347Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1491911889:42259..42406TCONS_00056159-exon-scaffold_268-1491911889:42259..42406Clytia hemisphaericaexon
TCONS_00056159-exon-scaffold_268-1491911889:41208..42133TCONS_00056159-exon-scaffold_268-1491911889:41208..42133Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056159-proteinTCONS_00056159-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:41208..44450 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.8845	4.60495	15.1022	7.83258	0.193316	0.0747661	0.0902022	0.0562975	0.0591228	0.0488221	0.0710818	0.0477562	0.0800912	0	0.0398394	0.0441514	1.17447	0.493923	0.158135	0.10406	21.1967	22.3739	718.42	695.983	272.746	269.402	16637.8	12446	81.1852	52.9567
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000786Green_fluorescent_prot
IPR011584GFP-related
IPR009017GFP
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0008218bioluminescence
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008218 bioluminescence
biological_process GO:0006091 generation of precursor metabolites and energy
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top