|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056153 ID=TCONS_00056153|Name=TCONS_00056153|organism=Clytia hemisphaerica|type=transcript|length=871bp
ataaaattcaaaaagaaaggtttaaaatcaaatttagaTCAGGATTGACA
GAAAAAAACATCGTTGTGAACTTTCTGATGAGCAATCAGTTACACACCAC
AACCTTGGAGTAGCATTCTTGTTCAAACACTTTGAAGCAACATGGGTAAA
GACTCTGATAACGAATTCTACTATCCGGATGGAAAAGATAAATATGGAAA
GAATAAGAGAGGTGTTGATTGGAAGAAAATTGGAACAAGAGCTGTGATAt
tgatcttgatttttttggtgtTGAGATATTTCTATGGAGGGAAGCCGGAA
ACTCCAAGGATAAAGAAGGGAACCTATAATGTAGCAGACTTTAAAGATAA
AGTTGGTGAACCTATCTTCGATCCATCAAAACTGAAACCACTCAAAAGAT
ATGAAGATCCTGAAGGTTGTCCACCGTTTGTGGATTGTGAACACCTGACG
TGCAATCAAGGCGAAGACCGAGTTATTCGGAAAGATGAGAATGGTTGTAG
GATATGTACATGCATTATTCATAACAGTTTATAAAATGCCACCTGTTCGT
CTGCAAATATCGAGGGAAAAGAATCATTATTTTGCGTGACGAGTTTTATA
GTGGAGGGATTCGTTTGGAGCATTTTACGCTGCTGAAAGATAACTTTTga
atatattgaatattttgtaaattttaataagaaaaatcttttatgtAAAA
ATTATTGGTACATCTCGATCTCGATCTCGCGGGTGCGAGTCAGGTCAGCG
GTAAACAGGAGATctatgtatttttataatctgatacaTACAGAACAGAT
TTGAGCTGTGGAAAATTACAGTggaaaattcgaatttagcgctgtcctga
CGTTAattaaaaccaaatttc Run BLAST on NCBI transcript from alignment at scaffold_268:143730..146991+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056153 ID=TCONS_00056153|Name=TCONS_00056153|organism=Clytia hemisphaerica|type=transcript|length=3262bp|location=Sequence derived from alignment at scaffold_268:143730..146991+ (Clytia hemisphaerica)
ataaaattcaaaaagaaaggtttaaaatcaaatttagaTCAGGATTGACA
GAAAAAAACATCGTTGTGAACTTTCTGATGAGCAATCAGTTACACACCAC
AACCTTGGAGTAGCATTCTTGTTCAAACACTTTGAAGCAACATGGGTAAA
GACTCTGATAACGAATTCTACTATCCGGATGGAAAAGATAAATATGGAAA
GAATAAGAGAGGTGTTGATTGGAAGAAAATTGGAACAAGAGCTGTAAGTA
AAATCAATATCATTCACAAGtgggtcaagttttcaaatggtGATACCTCT
ActtcaaaattatatttataccCAGAGATTTATTATGTTTCTTGAATAAA
gccttttttacacttttacaTGGATATATGTCAAACCTCCTAGTCCGAAA
CTAAAGCTtcagatatttttttaaattctgctTGTGATGAGGGGCAGGAT
GACGATTTTGTGTCGTCCACAATCATCTTCAAAAGCTTTTTGACTTCTTT
TCTTTgtgctatttcaagccttaaaaaggtttttttgcttatttgataac
gcttttggccaaaaatatcctgcaaccgccaaattaaattcccgtcaaat
ttacTTTATCCAGctatccgccaaaatttcttcctttaaggtattcaaTA
GCTAATAAAGGGACTGTGTACGAATTTGGTCCGATGGTATATTAATCATA
TATTCTCCTTAATTTCCAGGTGATAttgatcttgatttttttggtgtTGA
GATATTTCTATGGAGGGAAGCCGGAAACTCCAAGGATAAAGAAGGGAACC
TATAATGTAGCAGACTTTAAAGATAAAGTTGGTGAACCTATCTTCGATCC
ATCAAAACTGAAACCACTCAAAAGATATGAAGATCCTGAAGGTCAGTCAG
TGTGCCTAGAGGCCTTTCTTCACAgacttttttcgaaaatgtttaaATTG
ATATCAACGATTTGTTAGCAGTCAAGAATACATTTGATTAAAGACTTGAA
CTTCTCCTATTTCGATTTCCTTTACGGTTTCAAtcatacaaaaaaaaaca
aaataattcgtTTAATTGGCATCATTGCATCGTCCctcttagcctggata
tccaagctcaaaattttagaaaaaacaaaatttacctcaacatacaaagt
tctaaattatagagcttggtcttcctaaagaatgaaagtgcaaacccatg
tttccaaaactttcctagccaacccagggcaggcCAACCAAAAATTAGTA
AAAAGGAGCCTTACAAGATCTGAAGCCATTTAAAACATCtaaagattaca
ccagagtccttaaacaagtttgcatgtatcaccatgaccaaccatgtttt
cttggaaaatgaatttgcctctgttttcttctttttcatgtttttttact
CAGGTGAGTCAAGGCAAGTctcaaacatattttgcgtgacgcgcaccgct
tcccattgttccttaactttcgtatatagctTAAAAGAAGCGTATCAAtg
agaggatttcggaaagtgctgggccgaaaatttaaattaagccaatctca
agatatcggccaaaaactgattttgacgttatgaaatacgtcgaaaaaac
acgtcaaaaagacgaGTTAAATGACGTCGTTTTttaaaacagcgataact
tcgattCCATTGCTAcaattaacaccaaattttgactggagacgttgatt
gttgattttgaaataatgcatgaaaaaaatttgaaattttttgatgacgt
catcattatttgtcgtattttagtttttaccgacaataaatgacgtcatc
caaaaactttgaaaatttctcaacaaatattttggaatcgttaatctacg
tctccagtcaaaatttggtgttgattgcaaTAATAGACTttaagttatcg
ctgttttcaataatgacgtcatttgaatcttacgtatgacgtgttttttc
gatgtatttcataacgtcaaaatcagtttttggccgatatcttgagattg
gcttcatttaaattttcggcccagcactttccgaaatcctctagttaata
cgcttcttttgagctatatacgaaagttaaggaacaatgggaagcggtgc
ggtcacgcaaaatatgtttgagacttgccttaactcacctggtaacagaa
agctctatcttcactagcaagtggaggactatcctattttttcttcagga
ttgctccgcgccgtgtagattggtccttacggctttagtgaagtgagcgc
aagcaagcgaactgcattctcatatgagaatgcaaatcgctctagggaga
ccaggctgtaaaccagaacataaaatatcaaaaactgaACTGTGAaatgg
tttacagcctggatatccaggctacgtCCCTCTTAGTGAAAATTTCATAT
CTACAGAAGGGACTTTCTTTCTATTATCCACTCTCTTACCATTACTAGGT
TGTCCACCGTTTGTGGATTGTGAACACCTGACGTGCAATCAAGGCGAAGA
TCGAGTTATTCGGNCCCTCTTAGTGAAAATTTCATATCTACAGAAGGGAC
TTTCTTTCTATTATCCACTCTCTTACCATTACTAGGTTGTCCACCGTTTG
TGGATTGTGAACACCTGACGTGCAATCAAGGCGAAGACCGAGTTATTCGG
AAAGATGAGAATGGTTGTAGGATATGTACATGGTAAGATTCCAACGTTCA
TTTCCCAGAAATTGGGTACCATTAGCTTCATTCTTTCAGTACTTTTCTTC
TAAGTCAAATAtttattcaaacaaaatttgacgCACTAGAGAGATAGATC
TCAGAGAGAATCATTATGAGATAGTTTTAATAGCCGGCTTTGGGACATGT
GACCAATAAGAATACCAAGTGTTGTAAACCTACTTTTTTCTTATCTATTT
TAGCATTATTCATAACAGTTTATAAAATGCCACCTGTTCGTCTGCAAATA
TCGAGGGAAAAGAATCATTATTTTGCGTGACGAGTTTTATAGTGGAGGGA
TTCGTTTGGAGCATTTTACGCTGCTGAAAGATAACTTTTgaatatattga
atattttgtaaattttaataagaaaaatcttttatgtAAAAATTATTGGT
ACATCTCGATCTCGATCTCGCGGGTGCGAGTCAGGTCAGCGGTAAACAGG
AGATctatgtatttttataatctgatacaTACAGAACAGATTTGAGCTGT
GGAAAATTACAGTggaaaattcgaatttagcgctgtcctgaCGTTAatta
aaaccaaatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056153-exon-scaffold_268-1491911889:143730..143972 | TCONS_00056153-exon-scaffold_268-1491911889:143730..143972 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1510915933:143730..143972 | TCONS_00056153-exon-scaffold_268-1510915933:143730..143972 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1575043694:143730..143972 | TCONS_00056153-exon-scaffold_268-1575043694:143730..143972 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1491911889:144449..144620 | TCONS_00056153-exon-scaffold_268-1491911889:144449..144620 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1510915933:144449..144620 | TCONS_00056153-exon-scaffold_268-1510915933:144449..144620 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1575043694:144449..144620 | TCONS_00056153-exon-scaffold_268-1575043694:144449..144620 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1491911889:146315..146411 | TCONS_00056153-exon-scaffold_268-1491911889:146315..146411 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1510915933:146315..146411 | TCONS_00056153-exon-scaffold_268-1510915933:146315..146411 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1575043694:146315..146411 | TCONS_00056153-exon-scaffold_268-1575043694:146315..146411 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1491911889:146633..146991 | TCONS_00056153-exon-scaffold_268-1491911889:146633..146991 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1510915933:146633..146991 | TCONS_00056153-exon-scaffold_268-1510915933:146633..146991 | Clytia hemisphaerica | exon |
| TCONS_00056153-exon-scaffold_268-1575043694:146633..146991 | TCONS_00056153-exon-scaffold_268-1575043694:146633..146991 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_268 | supercontig | scaffold_268:143730..146991 + |
Blast
The following BLAST results are available for this feature:
|
