TCONS_00056149 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056149
Unique Name	TCONS_00056149
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1724

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_268:114786..122010+

transcript sequence

>TCONS_00056149 ID=TCONS_00056149|Name=TCONS_00056149|organism=Clytia hemisphaerica|type=transcript|length=1724bp
ATAGAAAAGAAGATGCCATTTAAAGGAGAAACATGGATCAAAACACAAAC
AGGTTGGCGAACCATCAGAACCATCGTCATCAACAATAAACAACAAAGGA
TTCCCCTGGTGACGAGTCCTTACAGTAGTGACAGTGAAGATGAAGTGATC
GCTCGAACACAACACGTTTGTGGGATATATTGGGAATGTGGGCCACCGTT
TGTCATTCTACCTGGTGAATGTCGTAAAACCTCATACCTCATCTCCAGAA
ACTCGCAAACACAGTGCACGATCAAATCACCTCCTGTTGTCTACATCTTC
AATAAACTTTCTTTCAAACAATCATTACGTAATCCAAGACGATTCAATTA
CGTCACTAATaTGCTGGAAATTGTTCTGAAGCAAGATTTTGTTTCCACAT
GTAGTTCATCACAGAAAAAGTTGCTGACCCTCTTTGAACAACTCGTCAAT
ACTGTTTTATCTACAGAAATAAATGTCCACATTGCAAAAAATCTGGTGTC
attatacaaagaaaaacatttaaaaaATAAAGGTACATTCAAACGACAAA
AATTATGGAACACAGTTCTGAATAAGATCAGTAGCATAGAGAGAAGACTA
CACAGATTTCATGTTAAAAAGATATGTCGTGGAACAAGAAATTCAAGCAA
CATTCACTTAACCGATCTACCAAGTGTTGTGTTGCATTATTTATTCCGCT
GTTTCTCTGACCATCAAGACATCGTCGCACTAGCCTGTGTCAATCAGCAA
TTTAACAGATTATCAAAGGACCCAGGCTTGTGGAAAAACATGTGTTTATA
TCATTTACCACCTTCTAAACTAGTGGGAATTGATCCTAACATACCTTCAT
CATggaaaaacacatacaaaaCATGTATCAAACGTACGACGATGCGACAT
TCATTCGCAGACCTGTTGATTATATGTTCAGATTGTCATTTTGTTTGTTG
GAAGGGAACGCACTTGTGTACActacagcaacaacaacaacaacaacaac
aacaacaaaattcgAATGAAAATATCAGTAAGAAACCACCTATAGCAATT
CCCATTACACCCAAAGGATTCTGTCATTTGTTCGAAAGATGAACATTATC
AAAGGTATTGGATTGTAAATAGTACTatgtgaaaaatgtttttgtaataG
TCGTGTTTCAACCTCAAGTGGATCGCTCAAAGGCAGAGTCACGTGACCCA
TGACCTATCCAACATTGCACTAGTCATAGCTTCAGATAAATTTATTATCA
AAGCTGATTCTccctaattcgatcttcaaggaccaaaaatttgaaaagga
gATTCGAACTATAGAGAGTATATTATACCACTCTCCGGTTGAGGGGATTA
CATCAATTGAACTAGAAAGAACCGTAAACGAAACATAAGAATAGTGGAAA
TGCCTCCAAGGAAAGTGAAGTGTGTAAAAacttaaaacaaaattgatacA
TCGAAAAGTTATTCTGGTAATGCTTGTAACATTGTCGCAGTTTTCTGTTT
TGTTACAATTTTGATTTCGCAATAGGTAAACAAGAAAACTAAACTAGACT
TTTTATCAGATGCTCTCCCGATGCTCTGTATATTGTTTTAAACACGAGTC
CATTGCGTGATTGAAAagctttatttttgtaaatatttttatatctacCT
CCTTGTTTGTATTTATTCGCATTTATCGTTTGTATATATAAGCTAAGACG
TATCTTATTAATAGAATTGgaaga

Run BLAST on NCBI

transcript from alignment at scaffold_268:114786..122010+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056149 ID=TCONS_00056149|Name=TCONS_00056149|organism=Clytia hemisphaerica|type=transcript|length=7225bp|location=Sequence derived from alignment at scaffold_268:114786..122010+ (Clytia hemisphaerica)
ATAGAAAAGAAGATGCCATTTAAAGGAGAAACATGGATCAAAACACAAAC
AGGTTGGCGAACCATCAGAACCATCGTCATCAACAATAAACAACAAAGGT
ATGCATTGATCAACTATTCTGGCAATGATCATTAGTcgcaaaatttcatt
tcctgGCTTTGTTCACGAATCTGAATCTTCTTTCCTTACAAAATAAGCAC
AACGGTCAAATATGAAAAACTCATGGACCAGTCAGTGCACTCTAGTTGCa
aggggttggaaattgtactttttgaatgttgaAGCGAATTCAGCCTATTT
AGAGCAAACTAAGAAACTTTCCTTCGGTCGTCTAGAAGGTCCTGGAGAGG
TCTGGTAGGTGTGAGAATTTCACGGGCCATCCACTTGGCACTTCAGAATT
GTCAATTAGCTCAGAAACTAAGAGCCAGAAGCGCTCTACAAAATTGACTA
ATATCAAGTTTTACAGCTAACACCTTATCGTCATATTTTCTTGTTAGGAT
TCCCCTGGTGACGAGTCCTTACAGTAGTGACAGTGAAGATGAAGTGATCG
CTCGAACACAACACGGTACGCCAAGCACCTACTACTTTCGATGCATTTTA
AGAGGAATGTTAGCTAGTAGTGAATCATGTACTCTGTTAAATTGATTTAG
CACTGTGAGGACTTGCCAAATAAGAGGGCAATATGAAAGAGCTCCACTAA
GAGCTCCAGTGGGATATAGTGTTATACAGGGTAGCTTATAGACTTTTCAT
TTATCATACCCCTTGTCTTTCTCTCCTAAATTTTTAATATGAAGTTTCAC
TAATTGTTCACTAGTTTGTGGGATATATTGGGAATGTGGGCCACCGTTTG
TCATTCTACCTGGTGAATGTCGTAAAACCTCATACCTCATCTCCAGAAAC
TCGCAAACACAGGTAAACTATTTTGCATTCTCCTTAACCTTTAATAACCT
TTACAAGAGAGTCTTTACCAATTCACACACCATCCTTTTTCTGTAAGGTT
GTATTTTTAACACTGTTCAAAAAATGTGGATCCGGGAAAACATATCATTT
TTTCAGGCAGCTCCAACCTTCTCTGATCATGTGTCTTATGTTGGCGTATC
GGGATAATATCGAATGGCAAATTTAATGCAGTAATAAAGAATGACATTTA
TTAAATTTCTCTTTTCCCTTTTCTAGTGCACGATCAAATCACCTCCTGTT
GTCTACATCTTCAATAAACTTTCTTTCAAACAATCATTACGTAATCCAAG
ACGATTCAATTACGTCACTAATGTAAGCAATCTTATTATTTAGTTCGAAT
CCTTGGTAGTACAGAGGAAGAAGGATAACTAGAATGTTGATATACTGAGA
CGCAAATTTGACAGCTTTTACGTGTAATAATGAGAGGGGACGTCCTCAAC
cgaaacttttattttgttactGACAAGGATAATTTCTGCATAAGTATATG
TAACATTTTCTCGtacaatatgaaaatatttcactcgttccggattttcc
ttATATTTTACGGAAAAtactcggaactcgtaaaatatttcccatattgt
actcgcaactgtccgataactggtttatcggtgacccaaaaaaatgcact
ttttgtgttggaaaaaagcgcagggcacttttgtagcaaattgacgttag
attgctgctaccgctacaatgcaacaacatcttttcatccatttatattt
tgtacatgtaaaatacaagatatattgtactctttttaaccaatcagatt
gcagatattttttggatcgccgataatacCTGAtattaatgaaaataatt
ttaacttTGATAATCATTGATACTGTATTTAAGTTCAAAATGTCTACGGT
AGATCCTCAAacaaagtcgccaaatctgtttcaTGGGAGACAACAGTTGC
TTCCTAGCCAATATTTACCAACGGTTCGCTGAGTAAAAACGGACAAATCA
TATACCAAATTCCTGCTTCTGAGCTAAAAGcgattgatttcatttttaat
ttttttcctttttttaagaTGCTGGAAATTGTTCTGAAGCAAGATTTTGT
TTCCACATGTAGTTCATCACAGAAAAAGTTGCTGACCCTCTTTGAACAAC
TCGTCAATACTGGTATGTTGAAAATATGGAattttgttattataaaaatt
taatttaaattttccgaAACTaagttcttttcaaaaattttagatagtTT
GATTGATGCTCTCTGGTTGCTTTACTCAACAGAAGTGATCTTCAAGGCTA
TTACATTGGTTAACCCTATTAACCCCAcaaccttttttgatttttgtagc
cccggggggaggggggtagaatctaccaccctcgattattttttatctag
aatagctatggccatgaaaatTGGTaaagatgttctccatcataaCACAG
ATtgagattctgtttgaagattctgaaagataaaagattGTTCTTTAACG
CGATTGCCGGTTTTGTATTTCCAATCAGGATTCTTTGTTAAAATCAATGC
TGAAAatgaattaaattttcaaaatatgatgacgtcataaatgatgatgt
catcattttcaaaactttttttaatatttttaaaatcatatTGTTAATAC
CTAtcacctgtcaaaatttgaatatgattggATCAATACTTCAGAAGTTA
TCgcaattttaaaatcttgagttttaagcaattttagcttggttttatgt
catgtttcacaataaagtcataaaacctgaggTAGAGGACCTATAACCCT
AAAaatttgcacaagtactcttaataagattttattaaaaatcagaaagt
ttcaagtcgcttcaaaaatctttcttcgagatatacacaaaagaacacca
gcgtggtagattctacccccccccctggggctaatagggttaatcATATG
AGTTTTCTATCCGTTAACCATCTTTTGCTGAACTTTTAACTTGTTAATAT
TTGAGGGACTCAACCTCAATGGTTTTCTAATTCCATATTTTGACAACTTG
ACATTTTTTTACCCTTAGCCTCTTAATGCTTGTTCGCATCTGTCAATAGA
CTGTAATTTTGAATTCGTTTGTTCTTTCTTTACAGTTTTATCTACAGAAA
TAAATGTCCACATTGCAAAAAATCTGGTGTCattatacaaagaaaaacat
ttaaaaagtaagGATCTCTATTCAACCCAAATGTCATTAGCATCATTTGA
GATTTATTATAGTTTGGGGATGGAAATAGTCgtgggggggggcactccag
gtaagtgacataccggacgtgcggcccttaagggtaggttttttggactt
tggaaagtgcactgtaagggttgatttgtgagcaagtgggaaaaagtgta
agggtgtaaaatttgagaaaataccaaattttgaggtaaaatttgagaaa
tttcaaaaaatgttgccctgaaaagttcagaaaaattcactataagggtc
gattttcagccaaatttttcctgcactgtaagggtgcgattttagagacc
tgatttttggccgaacgtacggtcgttttcaaaatcgagtgccccccctc
CGGGGGTGGATTTTTTGTAGAGGCTGTGCAGTTGTCCTGTTCCTAATGGG
TTTTATATTaaaactagccgtatgcgcagcgtcgcacgctgcgtgtccca
atccagcgAATCACTATACATATAAAAAACTCTAAAGGAAGAAAGATAGC
TGCCGAAATAATGAtatgattttcattttatgaaagaaagagaaaaaaag
ataacattgggcgaaaacaaaaaattgtttctggaatgcgggtgaaggaa
aaaagctctcatgcggccggccggaaaaattttttttttttgctattttt
gataacttaagctcattgaaatagaattataaagataacttttatgtaca
aacagtatgaagtaagccctggaatactaatgtatcaactactaacgaag
tCTGCGACcgggtcaaaaaatctttttttttcacaaggccggtttccgga
aacactacatttttttattttcgccttgcattgcaatttttaaccacaat
taagtAAATGGCTTAGAAGAATTATGTTTCAGATCTATTTATccatcgtg
gctagccatcgtgACTGGACATTCGaaagtgactttgaaagaccttaaaa
agttttaaaagtgatagggagccgctattgaaaacagaaaattttaaaga
gcttgattttaacccatctaGGTCCAATGTTTCTGTATAGAAATTACAGT
TGTATCTTagcgtctcaaagttagtctagtgttAGGAAAACTACATGAGG
GGCAAAAAGACGATGGTTCAACGCCGTGAAGAGGAGGCtctgtagagctt
tgttagattttggaaaactttttacagaactttgtaaacacacacgtttt
agtgtattaatatatagaataTCATAGAAAACTATATTCTGTCATCTCCT
ATTTCAGATAAAGGTACATTCAAACGACAAAAATTATGGAACACAGTTCT
GAATAAGATCAGTAGCATAGAGAGAAGACTACACAGATTTCATGTTAAAA
AGGTAGGCTCGTTTCTTTCCAGCATAATTGTCCGAGACTAAACTTTCTAA
CTTAACTTAACTATCTCAAAATCAGTAATGTGAAAGAATTTAGCACACGA
AGGCATGAAGTATGATGTACTGAATTCTTAAGAATTCATTCTTAACCACT
CTTTTTTCACCGCATTTTCTCTTTCAACAGATATGTCGTGGAACAAGAAA
TTCAAGCAACATTCACTTAACCGATCTACCAAGTGTTGTGTTGCATTATT
TATTCCGCTGTTTCTCTGACCATCAAGACATCGTCGCACTAGCCTGTGTC
AATCAGCAATTTAACAGATTATCAAAGGACCCAGGCTTGTGGAAAAACAT
GTGTTTATATCATTTACCACCTTCTAAAGTAAGTTATATTCCCATAGTCA
TATTGTTACCGTGACCCGGGAAAGGTCGTCGGGAGTAGCATTTAAAGGTT
GAGCTATTAAGCTTTCAAAAATGCACAACAAGTGACACTGTATAAGGACC
CAAAAGTCAGAAAAATAAGTTTGGTACATTTTGATACAATTTTTTGCTTT
ATGAAGTCAGTATTTTGAAATTACCAAAATTTTCAGACAACAAATAAGTG
GATTCCATGGTTATGCTCACATCACACAATGCGTGTAGTACAAAACTTGT
CGCAACATGAGTTTCGATTTATATAAGTTTATTACTTGAAGAGAGAATGG
AGCCTCGTTGTTAATTGAATCTCACTCTTGTTTTTTCAGCTAGTGGGAAT
TGATCCTAACATACCTTCATCATggaaaaacacatacaaaaCATGTATCA
AGTAAGAAAGTAATCTAGCTGACTCACTTTAATAAACCCGTCTTTTTTTA
ACATTGTCTACAAAAACCTATGTAAACCCCTGTCTCTCTCAGTgatgctg
aaaatattttaacaatttAGGTTTAAATAAAGGGGAATACAAATGAGGAT
GGGTGATGCCTCCTCCAGGGGCTTAAGTATTAGTGTAGTTTCCAATCACC
AGGGATGCAGGTTTGGTGGATTTTTCCATTGGCTGTGCGGGCTGTGTGAC
ACGGCTTGTAAAAGTCCGTCTTAAATTTAACTTTAAATGAATTTAGACAA
CAAATGTTCGCAATTTTCAGACATATACATGTATTATATACGAAATTGCA
TTACATTGTTTATGTTGCTGCTGTCGACATTTTGTATCCCGCGGAAAATG
ATGCGATATCTTTCTACTTTAGACGTACGACGATGCGACATTCATTCGCA
GACCTGTTGATTATATGTTCAGATTGTCATTTTGTTTGTTGGAAGGTGAG
GTTATGGTTTTCCTTGTATTTGCCAATGCCTTCAGAATCGAGCAACAAAA
TCACAAACATTTGCCTCGCATTTCCAAGCTATAAAAAACCTTATGCTTTA
TACAAGGATTTTTCAGCCATTGAATATAGAAAAACCGGAGCTAAATACTA
ATCAAATATAAAGAATGCAAGGGCTCCAATTATTTTAGggccagggcaaa
ccagtccaacatttcatccagcATGATTTTTAAATGTTGGATGgaaatgt
ttgatggaaaaacttgcgttggatgaagcgaaaatcaaggccggggcaaa
ccgatccaacatttcatccgacatgacttggaaaaaaatgaaaattcaaa
aaataaagaaaaaagtaccaccaaaccaatccaacacgaaaaattacaca
attcaatgagagagcttctttgatctcgccgcaaatgttggatgaaatgt
ttgatggtggtccaacatttcatccaacatcagaaaaaagcatgttggat
gaaatgttggatcggtttgccctggcctttgattatttgtttattttaaa
cTAGCTTGGAAAAAATCCtaacaaatatttttcttcgAAATATCCTTATT
TCTAGGGAACGCACTTGTGTACActacagcaacaacaacaacaacaacaa
caacaacaaaattcgAATGAAAATATCAGTAAGAAACCACCTATAGCAAT
TCCCATTACACCCAAAGGATTCTGTCATTTGTTCGAAAGATGAACATTAT
CAAAGGTATTGGATTGTAAATAGTACTatgtgaaaaatgtttttgtaata
GTCGTGTTTCAACCTCAAGTGGATCGCTCAAAGGCAGAGTCACGTGACCC
ATGACCTATCCAACATTGCACTAGTCATAGCTTCAGATAAATTTATTATC
AAAGCTGATTCTccctaattcgatcttcaaggaccaaaaatttgaaaagg
agATTCGAACTATAGAGAGTATATTATACCACTCTCCGGTTGAGGGGATT
ACATCAATTGAACTAGAAAGAACCGTAAACGAAACATAAGAATAGTGGAA
ATGCCTCCAAGGAAAGTGAAGTGTGTAAAAacttaaaacaaaattgatac
ATCGAAAAGTTATTCTGGTAATGCTTGTAACATTGTCGCAGTTTTCTGTT
TTGTTACAATTTTGATTTCGCAATAGGTAAACAAGAAAACTAAACTAGAC
TTTTTATCAGATGCTCTCCCGATGCTCTGTATATTGTTTTAAACACGAGT
CCATTGCGTGATTGAAAagctttatttttgtaaatatttttatatctacC
TCCTTGTTTGTATTTATTCGCATTTATCGTTTGTATATATAAGCTAAGAC
GTATCTTATTAATAGAATTGgaaga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035351	XLOC_035351	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_268	supercontig	scaffold_268:114786..122010 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0808327	0	0.091822	0	0.176667	0.426283	0.29931	0.908069	0.173045	0.250138	0.386439	0.403264	1.37404	0.282413	0.202048	2.62721	2.7532	0.176232	0.461035	5.68477	4.76915	1.05528	2.17519	8.00976	7.48057	0.113661	0.242605	0	0.0157249

Blast

[Close]

BLAST of TCONS_00056149 vs. Swiss-Prot (Human)
Match: FBX32 (F-box only protein 32 OS=Homo sapiens GN=FBXO32 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.377e-20
Identity = 62/236 (26.27%), Postives = 110/236 (46.61%), Query Frame = 1

Query:  298 FNKLSFKQSLRNPRRFNYVTNMLEIVLKQDFVSTCSSSQKKLLTLFEQLVNTVLSTEINVHIAKNLV-SLYKE-----KHLKNKGTFKRQKLWNTVLNKISSIERRLHRFHVKKICRGTRNS-SNIHLTDLPSVVLHYLFRCFSDHQDIVALACVNQQFNRLSKDPGLWKNMCLYHLPPSKL---VGIDPNIPSSWKNTYKTCIKRTTMRHSFADLLIICSDCHFVCWKGT-HLCT 972
            FN+L F  ++ + RRFNYV  +LE++ K    S    +QK  + + E++V  VL  + N+ + + L+ +LY       + +          +W   +  I   +++L+   +      TR +   +  TDLP  +   + +  SD +D+V+L       + LS+D  LWK +C YH    ++   + +       WK  Y   ++    +  + D L +C  CH + WKGT H CT
Sbjct:  104 FNRLDFSTAILDSRRFNYVVRLLELIAKSQLTSLSGIAQKNFMNILEKVVLKVLEDQQNIRLIRELLQTLYTSLCTLVQRVGKSVLVGNINMWVYRMETILHWQQQLNNIQI------TRPAFKGLTFTDLPLCLQLNIMQRLSDGRDLVSLGQAAPDLHVLSEDRLLWKKLCQYHFSERQIRKRLILSDKGQLDWKKMYFKLVRCYPRKEQYGDTLQLCKHCHILSWKGTDHPCT 333

The following BLAST results are available for this feature:

BLAST of TCONS_00056149 vs. Swiss-Prot (Human)

BLAST of TCONS_00056149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBX32	3.377e-20	26.27	F-box only protein 32 OS=Homo sapiens GN=FBXO32 PE...	[more]

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TCONS_00056149 (transcript) - C. hemisphaerica