TCONS_00056145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056145
Unique NameTCONS_00056145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056145 ID=TCONS_00056145|Name=TCONS_00056145|organism=Clytia hemisphaerica|type=transcript|length=553bp
GGAACAGTTAAAAGGACTCAGATCTAACTTGAATGAAAAGAATGCGGAAC
GTGTCTCTCATTCTGTAAGAAAACTTAGCCAAATCATCCAGAATGTTGAA
TCCAATCTCGATATCAAAAGCATTAAAGGACATAGAGCTCAACCGAAAAC
CTATGACGACGTAAAGAAACTTGCTGAAGCCTATAACCAAGCCGATGTAT
TCAAGCATAAACCAGGAAAGGAGCATGAATCATTCCCAAAGTTTGAAaag
tgttttttgaaaaaacttgatGTCGATGCCTTTACCAATTGGTTACGTTT
GAAAGAAAGTGAATTTAAAGACTTATTtcaagactaaaaatgttgttgTG
TGAAATAAGTTTTAATTTATGGGCAAATGTAGAGTTCAgcttattttctt
tattttctataaatcagatattttttatttaggattgattttcaaatttt
gattcgattttcatttttttaattgagcCAAATAAAGAGTTGACATTTTA
CATAATACAGAGTTGAGAAGCCTTGTTAAAGATGCAAAAATATAACATGC
TTA
Run BLAST on NCBI

protein sequence of TCONS_00056145-protein

>TCONS_00056145-protein ID=TCONS_00056145-protein|Name=TCONS_00056145-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
EQLKGLRSNLNEKNAERVSHSVRKLSQIIQNVESNLDIKSIKGHRAQPKT
YDDVKKLAEAYNQADVFKHKPGKEHESFPKFEKCFLKKLDVDAFTNWLRL
KESEFKDLFQD
Run BLAST on NCBI

transcript from alignment at scaffold_267:713458..714010

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056145 ID=TCONS_00056145|Name=TCONS_00056145|organism=Clytia hemisphaerica|type=transcript|length=553bp|location=Sequence derived from alignment at scaffold_267:713458..714010 (Clytia hemisphaerica)
TAAGCATGTTATATTTTTGCATCTTTAACAAGGCTTCTCAACTCTGTATT
ATGTAAAATGTCAACTCTTTATTTGgctcaattaaaaaaatgaaaatcga
atcaaaatttgaaaatcaatcctaaataaaaaatatctgatttatagaaa
ataaagaaaataagcTGAACTCTACATTTGCCCATAAATTAAAACTTATT
TCACAcaacaacatttttagtcttgaAATAAGTCTTTAAATTCACTTTCT
TTCAAACGTAACCAATTGGTAAAGGCATCGACatcaagttttttcaaaaa
acacttTTCAAACTTTGGGAATGATTCATGCTCCTTTCCTGGTTTATGCT
TGAATACATCGGCTTGGTTATAGGCTTCAGCAAGTTTCTTTACGTCGTCA
TAGGTTTTCGGTTGAGCTCTATGTCCTTTAATGCTTTTGATATCGAGATT
GGATTCAACATTCTGGATGATTTGGCTAAGTTTTCTTACAGAATGAGAGA
CACGTTCCGCATTCTTTTCATTCAAGTTAGATCTGAGTCCTTTTAACTGT
TCC

Coding sequence (CDS) from alignment at scaffold_267:713458..714010

>TCONS_00056145 ID=TCONS_00056145|Name=TCONS_00056145|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_267:713458..714010 (Clytia hemisphaerica)
ttagtcttgaAATAAGTCTTTAAATTCACTTTCTTTCAAACGTAACCAAT
TGGTAAAGGCATCGACatcaagttttttcaaaaaacacttTTCAAACTTT
GGGAATGATTCATGCTCCTTTCCTGGTTTATGCTTGAATACATCGGCTTG
GTTATAGGCTTCAGCAAGTTTCTTTACGTCGTCATAGGTTTTCGGTTGAG
CTCTATGTCCTTTAATGCTTTTGATATCGAGATTGGATTCAACATTCTGG
ATGATTTGGCTAAGTTTTCTTACAGAATGAGAGACACGTTCCGCATTCTT
TTCATTCAAGTTAGATCTGAGTCCTTTTAACTGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035347XLOC_035347Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056145-proteinTCONS_00056145-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056145-exon-scaffold_267-1491911889:713458..714010TCONS_00056145-exon-scaffold_267-1491911889:713458..714010Clytia hemisphaericaexon
TCONS_00056145-exon-scaffold_267-1510915933:713458..714010TCONS_00056145-exon-scaffold_267-1510915933:713458..714010Clytia hemisphaericaexon
TCONS_00056145-exon-scaffold_267-1575043694:713458..714010TCONS_00056145-exon-scaffold_267-1575043694:713458..714010Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:713458..714010 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0639732	0	0	0	1.21403	2.11276	2.48906	1.11719	0.633617	1.24109	0	1.24869	0.811639	0.617576	0.575919	0.883188	0.238535	0.702402	1.16639	1.12199	2.09363	1.06438	0.300243	0.391241	0.221459	0.239194	2.91256	5.81731	1.04054	1.42256
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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