TCONS_00056116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056116
Unique NameTCONS_00056116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056116 ID=TCONS_00056116|Name=TCONS_00056116|organism=Clytia hemisphaerica|type=transcript|length=496bp
TTCTCGACAAAGAGGTCGATAAAacaaaccttgtctgcttgttGAGCAGA
TTGATTATTTACACTCTCGACAAAGAAGTCGATAGAAAAACTATTGTCCG
ACATTTCGTACAcggcaaaaatataaaccttttctgcttgagcagattga
tttacattctcgacAAATTAAAGAAGTCGATAGAAAAACTATTGTCCGAT
ATTTCAGGTTGACATATATTCTTGACAAAGAGGTCGATAGAATAAAGCAT
CTCTTCTTAAAGAAGTCATTACCAAAGAATGACAAAACGGTCACAATGCA
ATTGTTTGACCTTTGCCTTTATGATTCCAATAAAAACTGCTGATTTGGCC
TATTTGAGCTGGTTTCcttgatttttaacaaacttagctttacttttgtt
atacattttttaatatacattatcatactatatatatattaatatacatt
ttgtgcttaatctgaggtttacattcagtgtaatttttaaaacaca
Run BLAST on NCBI

transcript from alignment at scaffold_267:70905..71400

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056116 ID=TCONS_00056116|Name=TCONS_00056116|organism=Clytia hemisphaerica|type=transcript|length=496bp|location=Sequence derived from alignment at scaffold_267:70905..71400 (Clytia hemisphaerica)
tgtgttttaaaaattacactgaatgtaaacctcagattaagcacaaaatg
tatattaatatatatatagtatgataatgtatattaaaaaatgtataaca
aaagtaaagctaagtttgttaaaaatcaagGAAACCAGCTCAAATAGGCC
AAATCAGCAGTTTTTATTGGAATCATAAAGGCAAAGGTCAAACAATTGCA
TTGTGACCGTTTTGTCATTCTTTGGTAATGACTTCTTTAAGAAGAGATGC
TTTATTCTATCGACCTCTTTGTCAAGAATATATGTCAACCTGAAATATCG
GACAATAGTTTTTCTATCGACTTCTTTAATTTgtcgagaatgtaaatcaa
tctgctcaagcagaaaaggtttatatttttgccgTGTACGAAATGTCGGA
CAATAGTTTTTCTATCGACTTCTTTGTCGAGAGTGTAAATAATCAATCTG
CTCaacaagcagacaaggtttgtTTTATCGACCTCTTTGTCGAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035318XLOC_035318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056116-exon-scaffold_267-1491911889:70905..71400TCONS_00056116-exon-scaffold_267-1491911889:70905..71400Clytia hemisphaericaexon
TCONS_00056116-exon-scaffold_267-1510915933:70905..71400TCONS_00056116-exon-scaffold_267-1510915933:70905..71400Clytia hemisphaericaexon
TCONS_00056116-exon-scaffold_267-1575043694:70905..71400TCONS_00056116-exon-scaffold_267-1575043694:70905..71400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:70905..71400 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.15839	4.42566	6.8624	4.02762	22.4932	11.2864	9.43351	8.84133	9.91457	8.59477	9.32279	11.3843	9.27398	6.48722	8.02921	5.39183	6.8531	4.98866	8.52633	13.1594	42.8737	42.0339	14.8742	21.2224	1.53482	5.3646	76.2678	62.1864	48.0241	50.4532
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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