TCONS_00056099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056099
Unique NameTCONS_00056099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056099 ID=TCONS_00056099|Name=TCONS_00056099|organism=Clytia hemisphaerica|type=transcript|length=374bp
GAGACATTTTAAAATCGATTGGGGCAGATGATAGGATGAAAATCTTGGAT
AATGGTGCTATTTCGGCAGTTCATATTGATGCTGAACTATTGGTTGCAAT
GAAAGCTGACCTTGACCTGTCCTGGCAACGCATGAAAGCACTTTCAAGAT
GGATGTTAACATTCAACATTTCGATGGCTTCCAACCATAAGCAAAGAGCG
ATCTCTAAAGAATGGTGTGGTGAAAACTTCTGCGTAGAAGAAGCTCCTTT
CTTATTTGATGTAAAGGACAAGAAGGGCGTCCACGTAGTTGGTTCTGCTG
CATGGGGCTTCATTCCTGATCTTCCAAGTGCTGTAGTCACCTTTGTGAAC
AATCTTGATACGTAAGTCTTCCTG
Run BLAST on NCBI

protein sequence of TCONS_00056099-protein

>TCONS_00056099-protein ID=TCONS_00056099-protein|Name=TCONS_00056099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
DILKSIGADDRMKILDNGAISAVHIDAELLVAMKADLDLSWQRMKALSRW
MLTFNISMASNHKQRAISKEWCGENFCVEEAPFLFDVKDKKGVHVVGSAA
WGFIPDLPSAVVTFVNNLDT
Run BLAST on NCBI

transcript from alignment at scaffold_267:518322..518825-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056099 ID=TCONS_00056099|Name=TCONS_00056099|organism=Clytia hemisphaerica|type=transcript|length=504bp|location=Sequence derived from alignment at scaffold_267:518322..518825- (Clytia hemisphaerica)
GAGACATTTTAAAATCGATTGGGGCAGATGATAGGATGAAAATCTTGGAT
AATGGTGCTATTTCGGCAGTTCATATTGATGCTGAACTATTGGTTGCAAT
GAAAGCTGACCTTGACCTGTCCTGGCAACGCATGAAAGCACTTTCAAGGT
AAAATCAATTCTTACAGTATGCCATATGCTTTTCTTAACCAACACTGAAT
CTTTATCAAATTAAAGGTGAAGTGGATACAATTTTTTCCAGACCAGTCAA
TCTAACATGAAATTATAATTTCTATTAGATGGATGTTAACATTCAACATT
TCGATGGCTTCCAACCATAAGCAAAGAGCGATCTCTAAAGAATGGTGTGG
TGAAAACTTCTGCGTAGAAGAAGCTCCTTTCTTATTTGATGTAAAGGACA
AGAAGGGCGTCCACGTAGTTGGTTCTGCTGCATGGGGCTTCATTCCTGAT
CTTCCAAGTGCTGTAGTCACCTTTGTGAACAATCTTGATACGTAAGTCTT
CCTG

Coding sequence (CDS) from alignment at scaffold_267:518322..518825-

>TCONS_00056099 ID=TCONS_00056099|Name=TCONS_00056099|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_267:518322..518825- (Clytia hemisphaerica)
ATGGATGTTAACATTCAACATTTCGATGGCTTCCAACCATAAGCAAAGAG
CGATCTCTAAAGAATGGTGTGGTGAAAACTTCTGCGTAGAAGAAGCTCCT
TTCTTATTTGATGTAAAGGACAAGAAGGGCGTCCACGTAGTTGGTTCTGC
TGCATGGGGCTTCATTCCTGATCTTCCAAGTGCTGTAGTCACCTTTGTGA
ACAATCTTGATACGTAAGACATTTTAAAATCGATTGGGGCAGATGATAGG
ATGAAAATCTTGGATAATGGTGCTATTTCGGCAGTTCATATTGATGCTGA
ACTATTGGTTGCAATGAAAGCTGACCTTGACCTGTCCTGGCAACGCATGA
AAGCACTTTCAAGATGGATGTTAACATTCAACATTTCGATGGCTTCCAAC
CATAAGCAAAGAGCGATCTCTAAAGAATGGTGTGGTGAAAACTTCTGCGT
AGAAGAAGCTCCTTTCTTATTTGATGTAAAGGACAAGAAGGGCGTCCACG
TAGTTGGTTCTGCTGCATGGGGCTTCATTCCTGATCTTCCAAGTGCTGTA
GTCACCTTTGTGAACAATCTTGATACGTAAGACATTTTAAAATCGATTGG
GGCAGATGATAGGATGAAAATCTTGGATAATGGTGCTATTTCGGCAGTTC
ATATTGATGCTGAACTATTGGTTGCAATGAAAGCTGACCTTGACCTGTCC
TGGCAACGCATGAAAGCACTTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035304XLOC_035304Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056099-proteinTCONS_00056099-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056099-exon-scaffold_267-1575043694:518678..518825TCONS_00056099-exon-scaffold_267-1575043694:518678..518825Clytia hemisphaericaexon
TCONS_00056099-exon-scaffold_267-1575043694:518322..518547TCONS_00056099-exon-scaffold_267-1575043694:518322..518547Clytia hemisphaericaexon
TCONS_00056099-exon-scaffold_267-1510915933:518678..518825TCONS_00056099-exon-scaffold_267-1510915933:518678..518825Clytia hemisphaericaexon
TCONS_00056099-exon-scaffold_267-1510915933:518322..518547TCONS_00056099-exon-scaffold_267-1510915933:518322..518547Clytia hemisphaericaexon
TCONS_00056099-exon-scaffold_267-1491911889:518678..518825TCONS_00056099-exon-scaffold_267-1491911889:518678..518825Clytia hemisphaericaexon
TCONS_00056099-exon-scaffold_267-1491911889:518322..518547TCONS_00056099-exon-scaffold_267-1491911889:518322..518547Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:518322..518825 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0545437	0	0	0.375123	0	0	0	0.70139	0	0	0	0	0	0	0	0	0.378815	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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