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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056084 ID=TCONS_00056084|Name=TCONS_00056084|organism=Clytia hemisphaerica|type=transcript|length=1191bp
CGTTGGTAACTTCCCAGTATTCTTGACTTCCAGGGTTTTCACCAGAACGC
CAGGAGAAGACACGGCGACGTTGGCTATCCATTGCGGCGTAATCAGGTGC
ATACAAATACTCACTATAGTGAACAGAAAGTATTTGACAGTTGTCACGAG
GTCCTATCAGTCGGTAAAGCTTGCAACTGAAGGATGACCTCTCCTCTGGT
GCGGTAAAGATGTTACGTCTGAGCTTATCCCATGCAAATTCTGCGCTCCC
ATTTGTTGGTGTAAACATATATTGCTCCATGTATTCATTATAGAGAAAAC
AAAGTTGCCCTTTGATCTCACATCCGATAACTTTTAGAAAGTTTGAGATG
ATAGAACGCTGTGGTGCTTCCAACTCTGTGTATATAACGGTATAAAAGCC
ACCATTTTCCGTTGTTTGGTAAATCTatcaaaaacttgaaagttttctTA
TCTTCTTCTAGCAAGGCGTTGTCCAAGTAACTTTTTACCCCATGATAGAT
AGCCTCCATATCATTACGGCGAAGAAGAGCACATTGAAGTGTTAAGATTA
ATCGTTTTTGGGTTGATATCATGGAATAGTAGTAGCAATAGGTTGCCAAC
CGGGTAGCCTCTGTCTCGTTAGTGGTATCCTTGTGCCTATCCAATTGTGC
TTGCAATGCTCCAAGAATCTCTACACCAGCCGTAGAGAAATCCAATGTTG
tcaaaaagcttttttcactttctttcaaaaGCCCACCATTCTTTTCAGCG
ATTCCATTAAGTTCTACCATTTGAGGTTTCATCAACCTTAAAGATCCAAG
GACTTGTCCGTAGATTTCTTCATCTTTAAAGTCTGCTAATGCTTCTTTGA
TGACTTTTTCCAAGACTTCTCCCATGGATGGTCCACTGCTGCCACCAAAT
AAGGGTAGAATGGATGCAACTAAGCAACACACACCAGCAATGAGCGGACC
AGCGGGTCCACCAACGACACCTCCAATCGTTCCAATGATCGCGAGGGCGC
CTGATGCTATACCCAAAGCATCACCAGAGGTGAACTTGTCTAAGTTGTTG
ACAACACTTTGAGCGACTTGGACAACCCCGTTTGCACCGTTGATGTAAGC
ATTTCCCTTGGCTTTCTTCTCCGaatctttcaaatctttttgcagACTCT
CGATAGATTTGGAGATATTCTCTGAATGAGATGACTGACTG Run BLAST on NCBI transcript from alignment at scaffold_267:609992..611241+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056084 ID=TCONS_00056084|Name=TCONS_00056084|organism=Clytia hemisphaerica|type=transcript|length=1250bp|location=Sequence derived from alignment at scaffold_267:609992..611241+ (Clytia hemisphaerica)
CGTTGGTAACTTCCCAGTATTCTTGACTTCCAGGGTTTTCACCAGAACGC
CAGGAGAAGACACGGCGACGTTGGCTATCCATTGCGGCGTAATCAGGTGN
CCAGAACGCCAGGAGAAGACACGGCGACGTTGGCTATCCATTGTGGCGTA
ATCAGGTGCATACAAATACTCACTATAGTGAACAGAAAGTATTTGACAGT
TGTCACGAGGTCCTATCAGTCGGTAAAGCTTGCAACTGAAGGATGACCTC
TCCTCTGGTGCGGTAAAGATGTTACGTCTGAGCTTATCCCATGCAAATTC
TGCGCTCCCATTTGTTGGTGTAAACATATATTGCTCCATGTATTCATTAT
AGAGAAAACAAAGTTGCCCTTTGATCTCACATCCGATAACTTTTAGAAAG
TTTGAGATGATAGAACGCTGTGGTGCTTCCAACTCTGTGTATATAACGGT
ATAAAAGCCACCATTTTCCGTTGTTTGGTAAATCTatcaaaaacttgaaa
gttttctTATCTTCTTCTAGCAAGGCGTTGTCCAAGTAACTTTTTACCCC
ATGATAGATAGCCTCCATATCATTACGGCGAAGAAGAGCACATTGAAGTG
TTAAGATTAATCGTTTTTGGGTTGATATCATGGAATAGTAGTAGCAATAG
GTTGCCAACCGGGTAGCCTCTGTCTCGTTAGTGGTATCCTTGTGCCTATC
CAATTGTGCTTGCAATGCTCCAAGAATCTCTACACCAGCCGTAGAGAAAT
CCAATGTTGtcaaaaagcttttttcactttctttcaaaaGCCCACCATTC
TTTTCAGCGATTCCATTAAGTTCTACCATTTGAGGTTTCATCAACCTTAA
AGATCCAAGGACTTGTCCGTAGATTTCTTCATCTTTAAAGTCTGCTAATG
CTTCTTTGATGACTTTTTCCAAGACTTCTCCCATGGATGGTCCACTGCTG
CCACCAAATAAGGGTAGAATGGATGCAACTAAGCAACACACACCAGCAAT
GAGCGGACCAGCGGGTCCACCAACGACACCTCCAATCGTTCCAATGATCG
CGAGGGCGCCTGATGCTATACCCAAAGCATCACCAGAGGTGAACTTGTCT
AAGTTGTTGACAACACTTTGAGCGACTTGGACAACCCCGTTTGCACCGTT
GATGTAAGCATTTCCCTTGGCTTTCTTCTCCGaatctttcaaatcttttt
gcagACTCTCGATAGATTTGGAGATATTCTCTGAATGAGATGACTGACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056084-exon-scaffold_267-1491911889:609992..610087 | TCONS_00056084-exon-scaffold_267-1491911889:609992..610087 | Clytia hemisphaerica | exon |
| TCONS_00056084-exon-scaffold_267-1510915933:609992..610087 | TCONS_00056084-exon-scaffold_267-1510915933:609992..610087 | Clytia hemisphaerica | exon |
| TCONS_00056084-exon-scaffold_267-1575043694:609992..610087 | TCONS_00056084-exon-scaffold_267-1575043694:609992..610087 | Clytia hemisphaerica | exon |
| TCONS_00056084-exon-scaffold_267-1491911889:610147..611241 | TCONS_00056084-exon-scaffold_267-1491911889:610147..611241 | Clytia hemisphaerica | exon |
| TCONS_00056084-exon-scaffold_267-1510915933:610147..611241 | TCONS_00056084-exon-scaffold_267-1510915933:610147..611241 | Clytia hemisphaerica | exon |
| TCONS_00056084-exon-scaffold_267-1575043694:610147..611241 | TCONS_00056084-exon-scaffold_267-1575043694:610147..611241 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:609992..611241 + |
Blast
The following BLAST results are available for this feature:
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