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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056083 ID=TCONS_00056083|Name=TCONS_00056083|organism=Clytia hemisphaerica|type=transcript|length=726bp
ACGAGCTCTTGTCTTACATCAAATGTTAGGAGACATTTTTTGTCCCAAGA
GAAACTGGATTCGACAAATTTGTACAATTGCtttgtaaataaataaacaa
gtGGCCCGATAGCTTGTGCCATAGAAATAAGATTTCCTGCTATTCTAGAA
ATTTCTCTAGCTGAAATAAATTCACAATTTAAAGCTTCTAAAAGTAAGTT
TTGgactttcagaatttttgttaTTGGGacttcaaatttcattttttcag
tcTCGATTATGAAACCTAgccatgtttttcttttttcgggTTCGAGGCTC
GACTTTTCAAAGTTTACAGTCAAACCAGCTGATTGCATGTCTTGCAGCAT
CCTATCTCTTGATCGAATCAAAGAAAAATGTGAACTATCCCCAGCTATAC
CGTCATCAAGATACCTCGCGCATTTAATTCCCATCGAACGCCATCTCTTT
ACTAATTGTCGCAtgagctttgtaaaaactaaGCATGCTATATTTAACCC
AAATGGCAAAACTTTGAAcacaaaaaattgcattttaccGTCGAATTCCC
ATGCGAATCCCAAAAAGGTTCGAAAAATAGGATTGATCGGTACATGATGG
TATCCACTTTTGAGGTCGAAAGTGATTAAAAAATCGTTCTGGTCGATTAA
CTCTGAAGCTTGTTTTAAATTTtcgtatttgaatttttttggttTGATGA
ATTTATTGACGTGTCTGAGATCTAAT Run BLAST on NCBI transcript from alignment at scaffold_267:540432..541219+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056083 ID=TCONS_00056083|Name=TCONS_00056083|organism=Clytia hemisphaerica|type=transcript|length=788bp|location=Sequence derived from alignment at scaffold_267:540432..541219+ (Clytia hemisphaerica)
ACGAGCTCTTGTCTTACATCAAATGTTAGGAGACATTTTTTGTCCCAAGA
GAAACTGGATTCGACAAATTTGTACAATTGCtttgtaaataaataaacaa
gtGGCCCGATAGCTTGTGCCATAGAAATAAGATTTCCTGCTATTCTAGAA
ATTTCTCTAGCTGAAATAAATTCACAATTTAAAGCTTCTAAAAGTAAGTT
TTGgactttcagaatttttgttaTTGGGacttcaaatttcattttttcag
tcTCGATTATGAAACCTAgccatgtttttcttttttcgggTTCGAGGCTC
GACTTTTCAAAGTTTACAGTCAAACCAGCTGATTGCATGTCTTGCAGCAT
CCTATCTCTTGATCGAATCAAAGAAAAATGTGAACTATCCCCAGCTATAC
CGTCATCAAGATACCTCGCGCATTTAATTCCCATCGAACGCCATCTCTTT
ACTAATTGTCGCAtgagctttgtaaaaactaaGCATGCTATATTTAACCC
AAATGGCAAAACTTTGAAcacaaaaaattgcattttaccGTCGAATTCCC
ATGCGAATCCCAAAAAGGTTCGAAAAATATGATTGATNATTGCATTTCAC
CGTCGAATTCCCATGCGAATCccaaaaagattcgaaaaacAGGATTGATC
GGTACATGATGGTATCCACTTTTGAGGTCGAAAGTGATTAAAAAATCGTT
CTGGTCGATTAACTCTGAAGCTTGTTTTAAATTTtcgtatttgaattttt
ttggttTGATGAATTTATTGACGTGTCTGAGATCTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056083-exon-scaffold_267-1491911889:540432..541009 | TCONS_00056083-exon-scaffold_267-1491911889:540432..541009 | Clytia hemisphaerica | exon |
| TCONS_00056083-exon-scaffold_267-1510915933:540432..541009 | TCONS_00056083-exon-scaffold_267-1510915933:540432..541009 | Clytia hemisphaerica | exon |
| TCONS_00056083-exon-scaffold_267-1575043694:540432..541009 | TCONS_00056083-exon-scaffold_267-1575043694:540432..541009 | Clytia hemisphaerica | exon |
| TCONS_00056083-exon-scaffold_267-1491911889:541072..541219 | TCONS_00056083-exon-scaffold_267-1491911889:541072..541219 | Clytia hemisphaerica | exon |
| TCONS_00056083-exon-scaffold_267-1510915933:541072..541219 | TCONS_00056083-exon-scaffold_267-1510915933:541072..541219 | Clytia hemisphaerica | exon |
| TCONS_00056083-exon-scaffold_267-1575043694:541072..541219 | TCONS_00056083-exon-scaffold_267-1575043694:541072..541219 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:540432..541219 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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