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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056080 ID=TCONS_00056080|Name=TCONS_00056080|organism=Clytia hemisphaerica|type=transcript|length=3156bp
CGACTCCATGTTTGATAAGTTGTCGGTGGTGAATGTTGATAAGATCGTCA
ATCTCCAATGACCGGCGTTTGTTTTGGTAATCGATCGTCTTTTAGTATAT
TCTATTGTATTCCTTGGTGGTTGATCGTCTGAGACATTAATTGATCATCT
GTTTGAAGTCCAGGAAGAAGCGCTCGTCCGATTGTTCCAATGtcataaaa
gtaaagaaagGTTGACCGGAGTATACAGGGGCTTATGGTTAAATATAGTA
CgagaaaatctggaaatttcgGAGAAGTTTGCTAAAGTATGTTAAAATGT
GATTTGAGTGAATGCAATAGCGAGGATGATTTAgaattttgaattgtatt
taaNAGAAGTTTGCTAAAGtatattgaaatgattttgagTGAATGCAATA
GCGAGGATGATTTAgaattttgaattgtatttaaAGACATACGAATCATA
ATTATGATTTAATGATGCGCATGCATAATTAATTTTCCGTGCGAAcctgc
ttttccagcttttttcaaTCGCTTGAAACATCGTTTCTCCACTATTTCTC
CTTTTCGAaatgaaacaaacaataaaaaacgATAGTTGTTTCTACTTTTT
GTTTGGTATTTGCTTGCATTACcacgagaaagaaaaaggaagtcGGAATG
CCTAAATCCCTAAAGAACGGAAAATTTATAACGCTTTTTGGCATTGTCTT
TGATATACGTGTTTCTGCTAGTGTTCGATGACCAACGACCGTGTTTTGAA
ATGAGACGGTCCGAAATACCATTGTTTGCTGCCTCTGATGCACCTCCTGA
TCTTAATGAGTGCAAACCGTAAATGGAAGGATTGGTTACTTTTGAAAGAT
GATCGTTGAAAGTTTTCAAAGCGGTCGTGTAGGATATCGGAAGAAGACCA
TGGGCATTGTGACCTCTCTTTGTTTTGTAAAGATGAAGAATTAGGTAAGC
CTCGGGTTTGTAATTTAATTTGGATAGTGACAAATATTTGCGAAGCCAGT
AAATTGGGCAGCATTTTGTTCCTGTCTTGCTAATGAAAACGATATTACCT
TCACGAACTTGGTCGGTTTTTGAATTTGGTAGAAAAGCTGTTGCACCGAA
ATTGTCAAAAGTGATTTCCTTTATCTGAATTTGAAGGATTTCGCTAATTC
TGAGAAGTCCTGCAAAACCTCTAGAATGACCATGAGAAGAAAGCAAATTT
CGACTAAATTTGTTGAAGTGAAATATGTTTTTGCGAGGTTTCTAATAAGC
TCTGAAGGCAAGGGCTCCTTTCGGCGGTGTCTGTCTGATGGGGATCGCCT
CTCTGCAATGATGCGTTTACCTCCTTCGAGTGCTAACTTAACAAGTTGGT
GATCTGTCGGAGAATCAAAACCTGAATTCAAATGTCCCCACCTTATGCCC
AAGATTGCTGCTGTCAGTGCGCCTTCGGTTGCGAAAGAATTTGTGAGATC
GTTTAAGTAGATGGCGACGTAAAGNTGTCCCCACCCTATGTCCAAGATTG
CTGCTGTCAGTGCGCCTTCAGTTGCGAAAGAATTTGTGATATCGTTTAAG
TAGATGGCGACGTAAAGTAGATCCGCAGGACAACTGTTTATTTCTTCGAA
GGGGTCGGCCCAAGATACCCATTTCTCCCATGCTGGCTTGTATTTTCTCA
AAGTAGATTTTGCGTAAGCTGCTTCTAATAGGGTAGGTAGACTTTCGGCT
TTCCGTTTGAGgcttttatttttaattgcCATTAACTTCTCTTTCAAACT
TGGAGCGTAATTATCTTTCGGAAAATTTAAAGTGCAATAATTTAAGTCAA
GAATTATGTTACCTTACGTCTGCGAACTTGAATTCAAGGTAGTAATCAAT
CATCAACTGGAGAACGATTGCTCCTTCAAGTGCGTTGCACAGGGGCATTG
ACGCGAAAGTTGTGTTGCACAGGGGCATTGACACGTCAAAGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTG
TAGCACAGCGAGAACGATTGCTCCTTCAAGTGCGTTGCACAGGGGCATTG
ACGCAAAAGTTGTGTTGCACAGGGGCATTGACACGTCAAAGGTGTTGCAC
AGCGGCATTGACACGTAAAACACATTTGTAACGGAGACAGTGATGTGAAG
TAAATTCGTCTTGCAACGGGGCGTTAAAGTTGTCACCATCATAAAATAGA
ATAAAGTAAGAATTTGTTAAGATCTTGCTCAATAAGTTTGCACAATATAT
TATGCGGACATGTCAATAAATAACGCCAAAGAGTAAAAATTTGCAAAGCC
GTCAAAAACACAATCGGTGTTTGAATAATTGAAAAAGAAAGGATCAAGCA
CTAGAAAATGTTTTACAAAAGGTTCAAACTCGAAACCGTTTGATGTCAAT
AAAGGCCAGTAGTATGCTGATGGCCACAAGGGGATAAATAGTATGCCTTT
ACCTTTACAATTTCTTAAATGTTTAATTGTTTTGCCTACTAATGTTGAGG
GGGACAAAGCCAATTAATTTCATGGTTTCCCCAGTGGCACGAAAAAGAAT
TAACTGCAGAAGTACCAGGACAATATTCTTTGGAGTTAAaccgaaaacat
tttttatttaaattgtcTGAAAATCGGTCGATGGTAATTTGTCCGTAGTT
TTTAAGTATACAAtcaaaagtttcattgtcaattgACCAGTTGTCTGTAT
CGTTGGTCTTTGAAATTATATCGGCAATTTCGTTTAACTCTCTAGGGATC
CAAGTAGGGTAAATTTCGATGTTGGACGATAaacaaatgtttaaaatttt
gattgcaAGATTTTGCAAGTGTTGCTTTGTGCTACCTCGATTTATGATTC
TACATATATTATTGTTGTCGGTAAACCACTCAATGTTTTCGTTTTCTAAG
ATTTTAGGAAATGATAGCAAAATGTATTTTACTGCAAGAAGTTCGCGGTA
AGTCGANCGTTTTCTAAGATTTTAGGAAATGATAGCAAAATGTATTTTAC
TGCAAGAAGTTCGCGGTCAAAGTTCCCTTTCGCTATGATGTTACCGAGTT
TTTCCGCAACATAACCCCCGTAACCGGTTTCGCTTGCATCCGAAAAAACG
ATTTTTGTGACTTCAGGTTGTGTGTTAATTCTAAAGCTCTTCGTGACTTC
TAAATT Run BLAST on NCBI transcript from alignment at scaffold_267:528931..532086+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056080 ID=TCONS_00056080|Name=TCONS_00056080|organism=Clytia hemisphaerica|type=transcript|length=3156bp|location=Sequence derived from alignment at scaffold_267:528931..532086+ (Clytia hemisphaerica)
CGACTCCATGTTTGATAAGTTGTCGGTGGTGAATGTTGATAAGATCGTCA
ATCTCCAATGACCGGCGTTTGTTTTGGTAATCGATCGTCTTTTAGTATAT
TCTATTGTATTCCTTGGTGGTTGATCGTCTGAGACATTAATTGATCATCT
GTTTGAAGTCCAGGAAGAAGCGCTCGTCCGATTGTTCCAATGtcataaaa
gtaaagaaagGTTGACCGGAGTATACAGGGGCTTATGGTTAAATATAGTA
CgagaaaatctggaaatttcgGAGAAGTTTGCTAAAGTATGTTAAAATGT
GATTTGAGTGAATGCAATAGCGAGGATGATTTAgaattttgaattgtatt
taaNAGAAGTTTGCTAAAGtatattgaaatgattttgagTGAATGCAATA
GCGAGGATGATTTAgaattttgaattgtatttaaAGACATACGAATCATA
ATTATGATTTAATGATGCGCATGCATAATTAATTTTCCGTGCGAAcctgc
ttttccagcttttttcaaTCGCTTGAAACATCGTTTCTCCACTATTTCTC
CTTTTCGAaatgaaacaaacaataaaaaacgATAGTTGTTTCTACTTTTT
GTTTGGTATTTGCTTGCATTACcacgagaaagaaaaaggaagtcGGAATG
CCTAAATCCCTAAAGAACGGAAAATTTATAACGCTTTTTGGCATTGTCTT
TGATATACGTGTTTCTGCTAGTGTTCGATGACCAACGACCGTGTTTTGAA
ATGAGACGGTCCGAAATACCATTGTTTGCTGCCTCTGATGCACCTCCTGA
TCTTAATGAGTGCAAACCGTAAATGGAAGGATTGGTTACTTTTGAAAGAT
GATCGTTGAAAGTTTTCAAAGCGGTCGTGTAGGATATCGGAAGAAGACCA
TGGGCATTGTGACCTCTCTTTGTTTTGTAAAGATGAAGAATTAGGTAAGC
CTCGGGTTTGTAATTTAATTTGGATAGTGACAAATATTTGCGAAGCCAGT
AAATTGGGCAGCATTTTGTTCCTGTCTTGCTAATGAAAACGATATTACCT
TCACGAACTTGGTCGGTTTTTGAATTTGGTAGAAAAGCTGTTGCACCGAA
ATTGTCAAAAGTGATTTCCTTTATCTGAATTTGAAGGATTTCGCTAATTC
TGAGAAGTCCTGCAAAACCTCTAGAATGACCATGAGAAGAAAGCAAATTT
CGACTAAATTTGTTGAAGTGAAATATGTTTTTGCGAGGTTTCTAATAAGC
TCTGAAGGCAAGGGCTCCTTTCGGCGGTGTCTGTCTGATGGGGATCGCCT
CTCTGCAATGATGCGTTTACCTCCTTCGAGTGCTAACTTAACAAGTTGGT
GATCTGTCGGAGAATCAAAACCTGAATTCAAATGTCCCCACCTTATGCCC
AAGATTGCTGCTGTCAGTGCGCCTTCGGTTGCGAAAGAATTTGTGAGATC
GTTTAAGTAGATGGCGACGTAAAGNTGTCCCCACCCTATGTCCAAGATTG
CTGCTGTCAGTGCGCCTTCAGTTGCGAAAGAATTTGTGATATCGTTTAAG
TAGATGGCGACGTAAAGTAGATCCGCAGGACAACTGTTTATTTCTTCGAA
GGGGTCGGCCCAAGATACCCATTTCTCCCATGCTGGCTTGTATTTTCTCA
AAGTAGATTTTGCGTAAGCTGCTTCTAATAGGGTAGGTAGACTTTCGGCT
TTCCGTTTGAGgcttttatttttaattgcCATTAACTTCTCTTTCAAACT
TGGAGCGTAATTATCTTTCGGAAAATTTAAAGTGCAATAATTTAAGTCAA
GAATTATGTTACCTTACGTCTGCGAACTTGAATTCAAGGTAGTAATCAAT
CATCAACTGGAGAACGATTGCTCCTTCAAGTGCGTTGCACAGGGGCATTG
ACGCGAAAGTTGTGTTGCACAGGGGCATTGACACGTCAAAGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTG
TAGCACAGCGAGAACGATTGCTCCTTCAAGTGCGTTGCACAGGGGCATTG
ACGCAAAAGTTGTGTTGCACAGGGGCATTGACACGTCAAAGGTGTTGCAC
AGCGGCATTGACACGTAAAACACATTTGTAACGGAGACAGTGATGTGAAG
TAAATTCGTCTTGCAACGGGGCGTTAAAGTTGTCACCATCATAAAATAGA
ATAAAGTAAGAATTTGTTAAGATCTTGCTCAATAAGTTTGCACAATATAT
TATGCGGACATGTCAATAAATAACGCCAAAGAGTAAAAATTTGCAAAGCC
GTCAAAAACACAATCGGTGTTTGAATAATTGAAAAAGAAAGGATCAAGCA
CTAGAAAATGTTTTACAAAAGGTTCAAACTCGAAACCGTTTGATGTCAAT
AAAGGCCAGTAGTATGCTGATGGCCACAAGGGGATAAATAGTATGCCTTT
ACCTTTACAATTTCTTAAATGTTTAATTGTTTTGCCTACTAATGTTGAGG
GGGACAAAGCCAATTAATTTCATGGTTTCCCCAGTGGCACGAAAAAGAAT
TAACTGCAGAAGTACCAGGACAATATTCTTTGGAGTTAAaccgaaaacat
tttttatttaaattgtcTGAAAATCGGTCGATGGTAATTTGTCCGTAGTT
TTTAAGTATACAAtcaaaagtttcattgtcaattgACCAGTTGTCTGTAT
CGTTGGTCTTTGAAATTATATCGGCAATTTCGTTTAACTCTCTAGGGATC
CAAGTAGGGTAAATTTCGATGTTGGACGATAaacaaatgtttaaaatttt
gattgcaAGATTTTGCAAGTGTTGCTTTGTGCTACCTCGATTTATGATTC
TACATATATTATTGTTGTCGGTAAACCACTCAATGTTTTCGTTTTCTAAG
ATTTTAGGAAATGATAGCAAAATGTATTTTACTGCAAGAAGTTCGCGGTA
AGTCGANCGTTTTCTAAGATTTTAGGAAATGATAGCAAAATGTATTTTAC
TGCAAGAAGTTCGCGGTCAAAGTTCCCTTTCGCTATGATGTTACCGAGTT
TTTCCGCAACATAACCCCCGTAACCGGTTTCGCTTGCATCCGAAAAAACG
ATTTTTGTGACTTCAGGTTGTGTGTTAATTCTAAAGCTCTTCGTGACTTC
TAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056080-exon-scaffold_267-1491911889:528931..532086 | TCONS_00056080-exon-scaffold_267-1491911889:528931..532086 | Clytia hemisphaerica | exon |
| TCONS_00056080-exon-scaffold_267-1510915933:528931..532086 | TCONS_00056080-exon-scaffold_267-1510915933:528931..532086 | Clytia hemisphaerica | exon |
| TCONS_00056080-exon-scaffold_267-1575043694:528931..532086 | TCONS_00056080-exon-scaffold_267-1575043694:528931..532086 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:528931..532086 + |
Blast
The following BLAST results are available for this feature:
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