|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056078 ID=TCONS_00056078|Name=TCONS_00056078|organism=Clytia hemisphaerica|type=transcript|length=1027bp
CGACAGGTCAACTTCTAGAGCTGAAGACTCAAAAAACAGAAGTCAGAAAG
ACCTattcaattaaaagttatggaagTTTTTATGAAATAAGGTTGTTTTG
TCTCGTAGAAGTATGCTTCATGGATTTCATGATGGCATTTTAATGGACAG
CTCCCCAGGAATGGTTTTTAATGCACCAGAAAGACGAAAGAAAAAGCTAA
CTACAGGTGAAAATTGGCGAAATGAAACAGATTTTGGATATACACGAGAA
TAGTGATCACTAAGCATTGATCCAAGTCGAGCTGTACTTTTCTTCATTCC
TACATAGTTTTGCTTGCTCTTATTGAAGATGTTGTGGATTGACTCAATGC
CTTGCTCGCCATATATCCCAAAGGATGATCTCCATTTTCTCATAAAGTTG
ATGGCATGATCCTCAAGGTCAGTGCTAACTTGGTGAGCAATGGCTGCTTC
AATGATATCGATAATATCATGATGGCGATTTATTTCATCTTCAAGGTCAA
AGATCTTCTGACTTACGTATCAAGATTGTTCACAAAGGTGACTACAGCAC
TTGGAAGATCAGGAATGAAGCCCCATGCAGCAGAACCAACTACGTGGACG
CCCTTCTTGTCCTTTACATCAAATAAGAAAGGAGCTTCTTCTACGCAGAA
GTTTTCACCACACCATTCTTTAGAGATCGCTCTTTGCTTATGGTTGGAAG
CCATCGAAATGTTGAATGTTAACATCCATCTAATAGAAATTATAATTTCA
TGTTAGATTGACTGGtctggaaaaaattgtatcCACTTCACCTTTAATTT
GATAAAGATTCAGTGTTGGTTAAGAAAAGCATATGGCATACTGTAAGAAT
TGATTTTACCTTGAAAGTGCTTTCATGCGTTGCCAGGACAGGTCAAGGTC
AGCTTTCATTGCAACCAATAGTTCAGCATCAATATGAACTGCCGAAATAG
CACCATTATCCAAGATTTTCATCCTATCATCTGCCCCAATCGATTTTAAA
ATGTCTCTAGTTTGATGAAGAAATACC Run BLAST on NCBI transcript from alignment at scaffold_267:509491..518845+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056078 ID=TCONS_00056078|Name=TCONS_00056078|organism=Clytia hemisphaerica|type=transcript|length=9355bp|location=Sequence derived from alignment at scaffold_267:509491..518845+ (Clytia hemisphaerica)
CGACAGGTCAACTTCTAGAGCTGAAGACTCAAAAAACAGAAGTCAGAAAG
ACCTattcaattaaaagttatggaagTTTTTATGAAATAAGGTTGTTTTG
TCTCGTAGAAGTATGCTTCATGGATTTCATGATGGCATTTTAATGGACAG
CTCCCCAGGAATGGTTTTTAATGCACCAGAAAGACGAAAGAAAAAGCTAA
CTACAGGTGAAAATTGTATgttattgtcatttttttctgtagagTTATAG
ATCTTCAAAGATGATGCACTTTCAAAGCAGATCGGATAATATTTCAATAT
ATTCTAAAAGATATTTGTGTTTGAATAAGCTAGATTAAGTATTGTGAAAG
TATCCAAAAAATCCAATTTGCATATATGAACTGAAATACTAATTTAGTAG
TCAAACCCCTTATTAGTTGAATCATGAAGTTTTTCATTACATCAGCGCCA
ATATCGCCAATAGCATGTCGTTCAGTAATTGACGGTAATAGACATACTAA
AGAGACATGAAGAGCGCGTGTTTTCTCCTTcaaattttcagtgttattaT
CATAATTGAATACCTCTGACATACTTGGAGTGAGTTATATTGGATCGCgc
aaagttaccttcattttttacACTTTCATTTTACCTTCATTCTTATCCAC
GGATTGCTGATAGTCACCCCGGAATGAGACTCGTTGGGCTCGAGAGTCTC
TTAGGGGCACTCATACCCAGTGACTAAACATAGGGCTGCACAGCAGCCCT
tttaggggcaccggtagggttgagGGTTCCACCTATTTATAGAGaattgc
cagttcggtataatatgttatgaattgcgtgattttgctgtgcgTCGATG
GCTCAAAACGGATAAGACGTTGGTTTCCGAATCAGAAGGTCTTTCTTTGA
TGGTTTGAACCCTGCACGGTGCGTTGATGTGATTGGTTAAAATATGATAC
AGTATGAAAACTTAGTCAGattgagaaactaagtctcagaaagtcagaca
gtcagaaaagagaaagacaggatcagagataGGAAAAAgtgaaggtaact
ttgggcgaTCCAATATAACTTCTTCCGGCATACTTAGAAATTATTGGAAG
ATTTAACTCTTAACTCTAATGATGTGTGATTGAcacaaacaaaaaattga
actaaaagaactagtaaaaataaaaatactatCAAAAACTAGAAAACTGT
GAAGACTGGCTTTGAACGTAACATTTATTTTATTCCATGTCATTCTTCTG
ATACCTTTCTCCTCTTTATTTCAGGGCGAAATGAAACAGATTTTGGATAT
ACACGAGAATAGTGATCACTAAGCATTGATCCAAGTCGAGCTGTACTTTT
CTTCATTCCTACATAGTTTTGCTTGCTCTTATTGAAGATGTTGTGGATTG
ACTCAATGCCTTGCTCGCCATATATCCCAAAGGATGATCTCCATTTTCTC
ATAAAGTTGATGGCATGATCCTCAAGTAAGTGTAACTTTGGTGTTACCGT
CTCACTTGGGAACTTAGCCCGGTAAAAGGACATCAATTCATTGATATCGT
GCTCTATGAATAATGAAAGGAATAggaataaaagttaggaatagAATCCC
TTTTTTTTATTCGGAAAGCCTAGGTAAGAGGTAACAATCTCAAATGTACC
AGTCAAAGTTTGTTATCGTAGCTATAAGTTCACTCCATGAAGAGTGATGG
GAAAGAAACAACTTTATACTGCAAAAGGACTTTATTAAAAAGATATCTTA
CCACAAGAAGAACTTAAATAATTTGTCTCTTTTTGTAgatattaaaaaat
tgaaatattaagtCATTCTTAAGTCAAACAAGCTTCACCTAGAATGTCAG
TTTCGTCTGGGTCTATTCCCTCTGCGCGATTCAAAACAGTATGACAAGCA
GCATACAAGTCAAATAATGTCTTGAAAGTCTTGCAAACTTGGATGCTATC
CATATGCACTTGCGAACCTGCAAGGTTATTCCTCCAAACATACTTGGGTA
GAGTCTGAACCAACATTCTAATGTTTTCTCcctaaaattgatttaaatgt
tACTTGATTTAAACTGTTTAACAGTTgttatgcgcagatatgtaattttt
gcgcagatatgtaatttttgcgcatatatgtaattattttgcgcagacat
gtaatttctgcgcaaatatgtaattattttgcgcaactatgtaattttga
gctgcgcagatatgtaattaaatttctgcgcagatatgtaattattttgc
gcaactatgtaattttgagctgcgcagatatgtaattaaatttctgcgca
gatatgtaaaacacgaccttttggactgaaaaactgactcgattttaaca
ttaatttttcaaagtatttaaTGGCATTGTTCTTGGACTATGACAGACAT
TTGgcgattgttgtttttcttataagcatcatctttataagaaacaagtc
aatatctttttatcaaagtgaTATTGGCTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgacttataagcatc
aactttataagaacacaattcataactcttaaaccaatagatattagctt
ttggcgtttggttctCTAATACAAACATAGGATAGTGCTGaagctagaaa
attttttttcttataagcattgaCTTTATAAGAGAACatattcataactc
ttaaaccaatagatattagcttttggcgtttggttctttcaaagcaaata
taggattgtgcttaagctagaaaaatgtatttttcttataaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Naaaatgtatttttcttataagcatcaactttataagaacacaattcata
actcttaaaccaacaGATATTAGCctttggcgtttggttctttcaaagca
tacataggattgtgcttaagctaaaaaatgtatttttcttataagcatca
actttataagaacacaattcataactcttaaaccaatagatattagcttt
tggcgtttggttctttcaaagcaaatataggattgtgcttaagctggaaa
aatgtatttttcttataagcatcaactttaaaagaacacaattcataact
cttaaaccaatgattattagctttcggcgatCGGTTGTATAAGCAACGAG
GGGACTGTGCtaaatcaggaaatttttgtttttcttataagcatcaactt
gataagaacacaattcataattcTCCAAacaatagatattagctttcggt
gatcggtctttcaaagcaaacataggatTGTGCCTGAAAaggaaacattt
atttttcttataagcatcaacttgataagaacacaattcataacaaacca
atgattattagctttcggtgatcggtctttcaaagcaaataNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTTTATTT
CGCTGCAATGTAAAGAAATGTATCTCGAGTCGAGGTTCTATTGGAGATCT
CATTATATTGTACTTTTTTATTAGATTGTACcgataagaaaaatatataa
tccgtattttgtgcttaccttgctaGATGggttcacttttttttaaagaa
tttggatactcttgttttttttaggtttcagcctaaagatattcttaaca
tgttctcccttgttaactttgtaataactaccgtattttttcaaataaac
gccctggacgtctttaatttaattttaagactttcaggaggggtgtttat
tcgaggtTATATACCATTCTACCAAGAGTtatttgattctcataaagtag
ttgcttatggGAAGAATTACTATCCTCATAATATTATACGActttccttg
tttactttgtaagaactaattaccgaagggtaaaTTACCGTCTATCAGGA
GTttttgctttgattcttataaagtagttgcttataagaaaaataaatat
gcttatcttatgcgccgttccttgtttactttgtaagaattaattaccga
agggtatatcaccgtctatcaagaattattgatttgattcttataaagta
tatgcttataagaaagatgataatgctcatattatgcgccatcccttatt
tactttgtaagaactaattaccgaagggtaaatgaccgtctatcaagagt
tattgctttgattcttataaagtagttgcttataagaaaaataaatatgc
acatattgtgcgccgttcctTATTTGCTTTGTAAAACCCAATAACCGAAG
GGTAAatgaccgtctatcaagagttattgctttgattcttataaagtagt
tgcttataagaaaaataaatatacacaTATTATGCgtcatcccttattta
ctttgtaaaaactaacaaacgaagggtatatcacagtctttcaagagtta
ttgatttgattcttataaagtatatgcttataagaaaaataaatatggtc
atattatgtgccgtcccttgtttactttgtaagaactaattaccgaaagg
tatatggtcgtctatcaagagttattgctttgattcttataaagtagttt
cttataagaaaaataaatatgcacatattatgtgccatcccttatttact
ttgtaaaaactaacaaccgaagggtatatcacagtctatcaagagttatt
gatttgagtCTTATAAAGTACATGcttttaagaaaaatgaatatgcttat
attatgtgccgttccttgtttactttgtaaaaactaatttccgaaaggta
tatggccgtctatcaagagttattgctttgattctNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNcttaaaaaaggtaaaagtaaTGG
TAAAATCTATCAAGGGGgtaccattgattttaaagatcgtgttttacata
tctgcgcagaaatttaattacatatctgcgcagaaatttaattacatagt
tgcacaaaataataacatatttgcgcagaaattacatatctgcgcaaaat
aattacatatatgcgcagaaattacatatctgcgcaaaaattacatatct
gcgcaaaaattacatatctgcgcacaaCAACAGTCAAGATCTGATGATTT
TTCCAGGGGAATATGCTTGATTGAAATTTAGATAAATAGGCCATGAGAAA
CTATGTGTAAAACAAAATACCTTTAGAAGCTTATTCACATGGTTGCCAAT
AAAAGATTTTCCGTGATAGGCCTGTCGTTCTACATTGACTGATTTCAACA
TATCATCCAAAGCTTTGGTACATTTCCCCTTCTTTAGCTGTTCTTCAATT
GGCTTTAATTTCATGTATTCTCTGATCTCTGATTGCTGAAATAGgaaaat
aaagctgaaaatagCAATCTCAATCCAAACATATTTTCAATctcaatttt
taaaatcttgtAAACCTGTCCTGGCCcctgaaatagaaaaaactaCCTTT
TCTAGGATTTGCTCTTGGTTATGCTCGAGCTGAGGTTTAAAAGCTTTATA
TATTTCTTCTTCTATTGTAGGGTCAGTGCTAACTTGGTGAGCAATGGCTG
CTTCAATGATATCGATAATATCATGATGGCGATTTATTTCATCTTCAAGG
TCAAAGATCTTCTGGTGAGTGGAAATAATACTCTCATCACATTCTCCTTT
TGCAACTGCCATTTTAAGGTCAATCAACTAAAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcttaat
tgcactgttcaaaaaagataacataacccccgtttttagtaataagttgg
agatttgatatttcacagaaaattgctaccaaggggtatttcgggtccca
gatcttccgaaggacttttctgtttgccttgaaatttaacaaacttctta
acctaaggttgaactaccactggtgtaaaaatgNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtctaaaacaagcaaaaa
aaatttccataattatatttgactatcaaaagttacaggcattcttgttt
ccactgccaattatatctggacagactttaaaaaGAATATAACGGTTATT
CTGGGTTATTCCAGGTTAttcatcatcaatttttaagttgatttttcaag
gaaaataaaaaattaccaaTGCTCACCTCGCAGTTTTTTTCCAATAGATT
GAAAAACTTTATGAAGGTTCCCAACGATATATGGAGAGCTTGCAGTGCAA
CCTaaagagaatttcaatatttttcagaatttagcaAATATCTTTGTTTA
CCCAAACTAAGGGCTCTTTGGTTTTGTTCTCTTCGATGGGCTAGCAAAAA
GAATTCTTGTTACCTGATCAAGTGGGATGTTGAATAATCGTTTTCCTATC
ACGTTTTTACacagttttgcatttttcaGATCTCCCTTGTATTGTAGGTC
TCTacaaatttcttcaaattttcatccaaaGAGGCAAGTGTTCTTGGCTT
GTTGTAGCGTTCGTCTTTGGGAATTTTTAGATCAGATTGTGTGATGTCAC
ATAACAAGCATGGGTACTTTCctgaataaagaaaaactttagTTGTATAC
ATATACTTTGCtgatgaaacaaaaaagattttcatggtGGACAATTGAAA
TTTGAATAATAGTTAATACTTACCACTTGCTCCTGTCAACCCATAAGCTG
CCCACAAAAACTCATAGTCACCAGTAAAGAAAACTCTGAAGGGGTGATCA
CTGTAAAAGAAATTTATagtctcaaaattttgattattgtTTTGGACCGG
CTCTCTGTAATGATTGAGATAAGAATTTGATTCATAATGTCTCCTGTGGA
TTCCAATTTTAAAGCTGCGATTTTTGACTTcctgaaatatcaaatttgct
taaacagataaaaatattgttaaagaCTCACTTCCATTTCATTTCTTGCA
ATTGGTCAACCTGACTGGTAAACATACTGAGACCTGTTTGTAGGTTTGGG
CGTTTATCCTTTGcttcaaacaaagaaaatacaacTGTATTGTCCTTGCT
GTTAGGATTCACAGTGTTGCAGACCTGATAACAGGCTTTGACTTTCCTCC
ATGGTCACCGCCAATCTTGATATGAATTTCATCATCCATCTGTGGATGAT
GTACCAATCTGCCTTCCCTAAACAGAATTTTTGTACCTGATTTTCAAAAg
ctctttttgaattttagacaTTAGGGAACTTCGAGATTTTTCAAAAgctc
tttttgaattttagacaTTAGAGAATTTCAAGATATTTAccatttatata
tttttctttcataaaaaATGTCCTTTTTCTTCAGGAAGACTTACGTATCA
AGATTGTTCACAAAGGTGACTACAGCACTTGGAAGATCAGGAATGAAGCC
CCATGCAGCAGAACCAACTACGTGGACGCCCTTCTTGTCCTTTACATCAA
ATAAGAAAGGAGCTTCTTCTACGCAGAAGTTTTCACCACACCATTCTTTA
GAGATCGCTCTTTGCTTATGGTTGGAAGCCATCGAAATGTTGAATGTTAA
CATCCATCTAATAGAAATTATAATTTCATGTTAGATTGACTGGtctggaa
aaaattgtatcCACTTCACCTTTAATTTGATAAAGATTCAGTGTTGGTTA
AGAAAAGCATATGGCATACTGTAAGAATTGATTTTACCTTGAAAGTGCTT
TCATGCGTTGCCAGGACAGGTCAAGGTCAGCTTTCATTGCAACCAATAGT
TCAGCATCAATATGAACTGCCGAAATAGCACCATTATCCAAGATTTTCAT
CCTATCATCTGCCCCAATCGATTTTAAAATGTCTCTAGTTTGATGAAGAA
ATACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056078-exon-scaffold_267-1491911889:509491..509705 | TCONS_00056078-exon-scaffold_267-1491911889:509491..509705 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1510915933:509491..509705 | TCONS_00056078-exon-scaffold_267-1510915933:509491..509705 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1575043694:509491..509705 | TCONS_00056078-exon-scaffold_267-1575043694:509491..509705 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1491911889:510765..510965 | TCONS_00056078-exon-scaffold_267-1491911889:510765..510965 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1510915933:510765..510965 | TCONS_00056078-exon-scaffold_267-1510915933:510765..510965 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1575043694:510765..510965 | TCONS_00056078-exon-scaffold_267-1575043694:510765..510965 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1491911889:515911..516004 | TCONS_00056078-exon-scaffold_267-1491911889:515911..516004 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1510915933:515911..516004 | TCONS_00056078-exon-scaffold_267-1510915933:515911..516004 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1575043694:515911..516004 | TCONS_00056078-exon-scaffold_267-1575043694:515911..516004 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1491911889:518329..518845 | TCONS_00056078-exon-scaffold_267-1491911889:518329..518845 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1510915933:518329..518845 | TCONS_00056078-exon-scaffold_267-1510915933:518329..518845 | Clytia hemisphaerica | exon |
| TCONS_00056078-exon-scaffold_267-1575043694:518329..518845 | TCONS_00056078-exon-scaffold_267-1575043694:518329..518845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:509491..518845 + |
Blast
The following BLAST results are available for this feature:
|
