XLOC_035292 (gene) - C. hemisphaerica

Overview
NameXLOC_035292
Unique NameXLOC_035292
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_267:509491..518845+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_035292 ID=XLOC_035292|Name=XLOC_035292|organism=Clytia hemisphaerica|type=gene|length=9355bp|location=Sequence derived from alignment at scaffold_267:509491..518845+ (Clytia hemisphaerica)
CGACAGGTCAACTTCTAGAGCTGAAGACTCAAAAAACAGAAGTCAGAAAG
ACCTattcaattaaaagttatggaagTTTTTATGAAATAAGGTTGTTTTG
TCTCGTAGAAGTATGCTTCATGGATTTCATGATGGCATTTTAATGGACAG
CTCCCCAGGAATGGTTTTTAATGCACCAGAAAGACGAAAGAAAAAGCTAA
CTACAGGTGAAAATTGTATgttattgtcatttttttctgtagagTTATAG
ATCTTCAAAGATGATGCACTTTCAAAGCAGATCGGATAATATTTCAATAT
ATTCTAAAAGATATTTGTGTTTGAATAAGCTAGATTAAGTATTGTGAAAG
TATCCAAAAAATCCAATTTGCATATATGAACTGAAATACTAATTTAGTAG
TCAAACCCCTTATTAGTTGAATCATGAAGTTTTTCATTACATCAGCGCCA
ATATCGCCAATAGCATGTCGTTCAGTAATTGACGGTAATAGACATACTAA
AGAGACATGAAGAGCGCGTGTTTTCTCCTTcaaattttcagtgttattaT
CATAATTGAATACCTCTGACATACTTGGAGTGAGTTATATTGGATCGCgc
aaagttaccttcattttttacACTTTCATTTTACCTTCATTCTTATCCAC
GGATTGCTGATAGTCACCCCGGAATGAGACTCGTTGGGCTCGAGAGTCTC
TTAGGGGCACTCATACCCAGTGACTAAACATAGGGCTGCACAGCAGCCCT
tttaggggcaccggtagggttgagGGTTCCACCTATTTATAGAGaattgc
cagttcggtataatatgttatgaattgcgtgattttgctgtgcgTCGATG
GCTCAAAACGGATAAGACGTTGGTTTCCGAATCAGAAGGTCTTTCTTTGA
TGGTTTGAACCCTGCACGGTGCGTTGATGTGATTGGTTAAAATATGATAC
AGTATGAAAACTTAGTCAGattgagaaactaagtctcagaaagtcagaca
gtcagaaaagagaaagacaggatcagagataGGAAAAAgtgaaggtaact
ttgggcgaTCCAATATAACTTCTTCCGGCATACTTAGAAATTATTGGAAG
ATTTAACTCTTAACTCTAATGATGTGTGATTGAcacaaacaaaaaattga
actaaaagaactagtaaaaataaaaatactatCAAAAACTAGAAAACTGT
GAAGACTGGCTTTGAACGTAACATTTATTTTATTCCATGTCATTCTTCTG
ATACCTTTCTCCTCTTTATTTCAGGGCGAAATGAAACAGATTTTGGATAT
ACACGAGAATAGTGATCACTAAGCATTGATCCAAGTCGAGCTGTACTTTT
CTTCATTCCTACATAGTTTTGCTTGCTCTTATTGAAGATGTTGTGGATTG
ACTCAATGCCTTGCTCGCCATATATCCCAAAGGATGATCTCCATTTTCTC
ATAAAGTTGATGGCATGATCCTCAAGTAAGTGTAACTTTGGTGTTACCGT
CTCACTTGGGAACTTAGCCCGGTAAAAGGACATCAATTCATTGATATCGT
GCTCTATGAATAATGAAAGGAATAggaataaaagttaggaatagAATCCC
TTTTTTTTATTCGGAAAGCCTAGGTAAGAGGTAACAATCTCAAATGTACC
AGTCAAAGTTTGTTATCGTAGCTATAAGTTCACTCCATGAAGAGTGATGG
GAAAGAAACAACTTTATACTGCAAAAGGACTTTATTAAAAAGATATCTTA
CCACAAGAAGAACTTAAATAATTTGTCTCTTTTTGTAgatattaaaaaat
tgaaatattaagtCATTCTTAAGTCAAACAAGCTTCACCTAGAATGTCAG
TTTCGTCTGGGTCTATTCCCTCTGCGCGATTCAAAACAGTATGACAAGCA
GCATACAAGTCAAATAATGTCTTGAAAGTCTTGCAAACTTGGATGCTATC
CATATGCACTTGCGAACCTGCAAGGTTATTCCTCCAAACATACTTGGGTA
GAGTCTGAACCAACATTCTAATGTTTTCTCcctaaaattgatttaaatgt
tACTTGATTTAAACTGTTTAACAGTTgttatgcgcagatatgtaattttt
gcgcagatatgtaatttttgcgcatatatgtaattattttgcgcagacat
gtaatttctgcgcaaatatgtaattattttgcgcaactatgtaattttga
gctgcgcagatatgtaattaaatttctgcgcagatatgtaattattttgc
gcaactatgtaattttgagctgcgcagatatgtaattaaatttctgcgca
gatatgtaaaacacgaccttttggactgaaaaactgactcgattttaaca
ttaatttttcaaagtatttaaTGGCATTGTTCTTGGACTATGACAGACAT
TTGgcgattgttgtttttcttataagcatcatctttataagaaacaagtc
aatatctttttatcaaagtgaTATTGGCTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgacttataagcatc
aactttataagaacacaattcataactcttaaaccaatagatattagctt
ttggcgtttggttctCTAATACAAACATAGGATAGTGCTGaagctagaaa
attttttttcttataagcattgaCTTTATAAGAGAACatattcataactc
ttaaaccaatagatattagcttttggcgtttggttctttcaaagcaaata
taggattgtgcttaagctagaaaaatgtatttttcttataaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Naaaatgtatttttcttataagcatcaactttataagaacacaattcata
actcttaaaccaacaGATATTAGCctttggcgtttggttctttcaaagca
tacataggattgtgcttaagctaaaaaatgtatttttcttataagcatca
actttataagaacacaattcataactcttaaaccaatagatattagcttt
tggcgtttggttctttcaaagcaaatataggattgtgcttaagctggaaa
aatgtatttttcttataagcatcaactttaaaagaacacaattcataact
cttaaaccaatgattattagctttcggcgatCGGTTGTATAAGCAACGAG
GGGACTGTGCtaaatcaggaaatttttgtttttcttataagcatcaactt
gataagaacacaattcataattcTCCAAacaatagatattagctttcggt
gatcggtctttcaaagcaaacataggatTGTGCCTGAAAaggaaacattt
atttttcttataagcatcaacttgataagaacacaattcataacaaacca
atgattattagctttcggtgatcggtctttcaaagcaaataNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGTTTATTT
CGCTGCAATGTAAAGAAATGTATCTCGAGTCGAGGTTCTATTGGAGATCT
CATTATATTGTACTTTTTTATTAGATTGTACcgataagaaaaatatataa
tccgtattttgtgcttaccttgctaGATGggttcacttttttttaaagaa
tttggatactcttgttttttttaggtttcagcctaaagatattcttaaca
tgttctcccttgttaactttgtaataactaccgtattttttcaaataaac
gccctggacgtctttaatttaattttaagactttcaggaggggtgtttat
tcgaggtTATATACCATTCTACCAAGAGTtatttgattctcataaagtag
ttgcttatggGAAGAATTACTATCCTCATAATATTATACGActttccttg
tttactttgtaagaactaattaccgaagggtaaaTTACCGTCTATCAGGA
GTttttgctttgattcttataaagtagttgcttataagaaaaataaatat
gcttatcttatgcgccgttccttgtttactttgtaagaattaattaccga
agggtatatcaccgtctatcaagaattattgatttgattcttataaagta
tatgcttataagaaagatgataatgctcatattatgcgccatcccttatt
tactttgtaagaactaattaccgaagggtaaatgaccgtctatcaagagt
tattgctttgattcttataaagtagttgcttataagaaaaataaatatgc
acatattgtgcgccgttcctTATTTGCTTTGTAAAACCCAATAACCGAAG
GGTAAatgaccgtctatcaagagttattgctttgattcttataaagtagt
tgcttataagaaaaataaatatacacaTATTATGCgtcatcccttattta
ctttgtaaaaactaacaaacgaagggtatatcacagtctttcaagagtta
ttgatttgattcttataaagtatatgcttataagaaaaataaatatggtc
atattatgtgccgtcccttgtttactttgtaagaactaattaccgaaagg
tatatggtcgtctatcaagagttattgctttgattcttataaagtagttt
cttataagaaaaataaatatgcacatattatgtgccatcccttatttact
ttgtaaaaactaacaaccgaagggtatatcacagtctatcaagagttatt
gatttgagtCTTATAAAGTACATGcttttaagaaaaatgaatatgcttat
attatgtgccgttccttgtttactttgtaaaaactaatttccgaaaggta
tatggccgtctatcaagagttattgctttgattctNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNcttaaaaaaggtaaaagtaaTGG
TAAAATCTATCAAGGGGgtaccattgattttaaagatcgtgttttacata
tctgcgcagaaatttaattacatatctgcgcagaaatttaattacatagt
tgcacaaaataataacatatttgcgcagaaattacatatctgcgcaaaat
aattacatatatgcgcagaaattacatatctgcgcaaaaattacatatct
gcgcaaaaattacatatctgcgcacaaCAACAGTCAAGATCTGATGATTT
TTCCAGGGGAATATGCTTGATTGAAATTTAGATAAATAGGCCATGAGAAA
CTATGTGTAAAACAAAATACCTTTAGAAGCTTATTCACATGGTTGCCAAT
AAAAGATTTTCCGTGATAGGCCTGTCGTTCTACATTGACTGATTTCAACA
TATCATCCAAAGCTTTGGTACATTTCCCCTTCTTTAGCTGTTCTTCAATT
GGCTTTAATTTCATGTATTCTCTGATCTCTGATTGCTGAAATAGgaaaat
aaagctgaaaatagCAATCTCAATCCAAACATATTTTCAATctcaatttt
taaaatcttgtAAACCTGTCCTGGCCcctgaaatagaaaaaactaCCTTT
TCTAGGATTTGCTCTTGGTTATGCTCGAGCTGAGGTTTAAAAGCTTTATA
TATTTCTTCTTCTATTGTAGGGTCAGTGCTAACTTGGTGAGCAATGGCTG
CTTCAATGATATCGATAATATCATGATGGCGATTTATTTCATCTTCAAGG
TCAAAGATCTTCTGGTGAGTGGAAATAATACTCTCATCACATTCTCCTTT
TGCAACTGCCATTTTAAGGTCAATCAACTAAAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcttaat
tgcactgttcaaaaaagataacataacccccgtttttagtaataagttgg
agatttgatatttcacagaaaattgctaccaaggggtatttcgggtccca
gatcttccgaaggacttttctgtttgccttgaaatttaacaaacttctta
acctaaggttgaactaccactggtgtaaaaatgNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtctaaaacaagcaaaaa
aaatttccataattatatttgactatcaaaagttacaggcattcttgttt
ccactgccaattatatctggacagactttaaaaaGAATATAACGGTTATT
CTGGGTTATTCCAGGTTAttcatcatcaatttttaagttgatttttcaag
gaaaataaaaaattaccaaTGCTCACCTCGCAGTTTTTTTCCAATAGATT
GAAAAACTTTATGAAGGTTCCCAACGATATATGGAGAGCTTGCAGTGCAA
CCTaaagagaatttcaatatttttcagaatttagcaAATATCTTTGTTTA
CCCAAACTAAGGGCTCTTTGGTTTTGTTCTCTTCGATGGGCTAGCAAAAA
GAATTCTTGTTACCTGATCAAGTGGGATGTTGAATAATCGTTTTCCTATC
ACGTTTTTACacagttttgcatttttcaGATCTCCCTTGTATTGTAGGTC
TCTacaaatttcttcaaattttcatccaaaGAGGCAAGTGTTCTTGGCTT
GTTGTAGCGTTCGTCTTTGGGAATTTTTAGATCAGATTGTGTGATGTCAC
ATAACAAGCATGGGTACTTTCctgaataaagaaaaactttagTTGTATAC
ATATACTTTGCtgatgaaacaaaaaagattttcatggtGGACAATTGAAA
TTTGAATAATAGTTAATACTTACCACTTGCTCCTGTCAACCCATAAGCTG
CCCACAAAAACTCATAGTCACCAGTAAAGAAAACTCTGAAGGGGTGATCA
CTGTAAAAGAAATTTATagtctcaaaattttgattattgtTTTGGACCGG
CTCTCTGTAATGATTGAGATAAGAATTTGATTCATAATGTCTCCTGTGGA
TTCCAATTTTAAAGCTGCGATTTTTGACTTcctgaaatatcaaatttgct
taaacagataaaaatattgttaaagaCTCACTTCCATTTCATTTCTTGCA
ATTGGTCAACCTGACTGGTAAACATACTGAGACCTGTTTGTAGGTTTGGG
CGTTTATCCTTTGcttcaaacaaagaaaatacaacTGTATTGTCCTTGCT
GTTAGGATTCACAGTGTTGCAGACCTGATAACAGGCTTTGACTTTCCTCC
ATGGTCACCGCCAATCTTGATATGAATTTCATCATCCATCTGTGGATGAT
GTACCAATCTGCCTTCCCTAAACAGAATTTTTGTACCTGATTTTCAAAAg
ctctttttgaattttagacaTTAGGGAACTTCGAGATTTTTCAAAAgctc
tttttgaattttagacaTTAGAGAATTTCAAGATATTTAccatttatata
tttttctttcataaaaaATGTCCTTTTTCTTCAGGAAGACTTACGTATCA
AGATTGTTCACAAAGGTGACTACAGCACTTGGAAGATCAGGAATGAAGCC
CCATGCAGCAGAACCAACTACGTGGACGCCCTTCTTGTCCTTTACATCAA
ATAAGAAAGGAGCTTCTTCTACGCAGAAGTTTTCACCACACCATTCTTTA
GAGATCGCTCTTTGCTTATGGTTGGAAGCCATCGAAATGTTGAATGTTAA
CATCCATCTAATAGAAATTATAATTTCATGTTAGATTGACTGGtctggaa
aaaattgtatcCACTTCACCTTTAATTTGATAAAGATTCAGTGTTGGTTA
AGAAAAGCATATGGCATACTGTAAGAATTGATTTTACCTTGAAAGTGCTT
TCATGCGTTGCCAGGACAGGTCAAGGTCAGCTTTCATTGCAACCAATAGT
TCAGCATCAATATGAACTGCCGAAATAGCACCATTATCCAAGATTTTCAT
CCTATCATCTGCCCCAATCGATTTTAAAATGTCTCTAGTTTGATGAAGAA
ATACC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00056076TCONS_00056076Clytia hemisphaericatranscript
TCONS_00056077TCONS_00056077Clytia hemisphaericatranscript
TCONS_00056078TCONS_00056078Clytia hemisphaericatranscript
TCONS_00056079TCONS_00056079Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00056077-proteinTCONS_00056077-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:509491..518845 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11	0.78	0.35	0.26	20.06	11.87	6.66	7.63	3.42	8.28	5.34	3.96	6.26	8.61	7.47	8.85	10.18	8.18	3.27	3.76	9.54	9.22	3.16	4.07	3.49	6.74	5.02	2.88	1.81	1.02