TCONS_00056054 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056054
Unique NameTCONS_00056054
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056054 ID=TCONS_00056054|Name=TCONS_00056054|organism=Clytia hemisphaerica|type=transcript|length=254bp
TCGTTCTTCGGGAAAAAGAAATCCGTCGATGATGCTGCTGAGTCAACAGA
AATGAGGAGAGTCAATGAGATGCTTAGAAAACTTATACGCTAAATATCAG
AAATCCAGGATAATTTTGTCACAAGAAagtatatttatttattatagAAG
AATGTTAGGGTGCTTTTTTTAAACTGAAATACatattttaaatctttaaa
atttcacTGGTAAAATTGTTATTATGGTCAAACATCTGCAAACACCAATC
CAAT
Run BLAST on NCBI

transcript from alignment at scaffold_266:602238..602491

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056054 ID=TCONS_00056054|Name=TCONS_00056054|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at scaffold_266:602238..602491 (Clytia hemisphaerica)
ATTGGATTGGTGTTTGCAGATGTTTGACCATAATAACAATTTTACCAgtg
aaattttaaagatttaaaatatGTATTTCAGTTTAAAAAAAGCACCCTAA
CATTCTTctataataaataaatatactTTCTTGTGACAAAATTATCCTGG
ATTTCTGATATTTAGCGTATAAGTTTTCTAAGCATCTCATTGACTCTCCT
CATTTCTGTTGACTCAGCAGCATCATCGACGGATTTCTTTTTCCCGAAGA
ACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035278XLOC_035278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056054-exon-scaffold_266-1491911889:602238..602491TCONS_00056054-exon-scaffold_266-1491911889:602238..602491Clytia hemisphaericaexon
TCONS_00056054-exon-scaffold_266-1510915933:602238..602491TCONS_00056054-exon-scaffold_266-1510915933:602238..602491Clytia hemisphaericaexon
TCONS_00056054-exon-scaffold_266-1575043694:602238..602491TCONS_00056054-exon-scaffold_266-1575043694:602238..602491Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:602238..602491 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.702062	0	0.797508	0	0	0	0	0	0	0	0	0	0	0	0	62.6936	62.597	0	0	69.6086	69.2634	7.4293	8.25527	0.772976	3.44931	0	0	0	0.814142
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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