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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056047 ID=TCONS_00056047|Name=TCONS_00056047|organism=Clytia hemisphaerica|type=transcript|length=879bp
TAATTTAGATGCTCTCACTGTTTGATTTGGCAACACGAAAAATGCAATAc
agtaacaaaaatttttagtACGTCGTTCATCGTTTACATATTTTATATGC
CTCTCTTTCATAGTTTACAAATCTTACAATaatcttgaaaaataaaaaaa
atataatacatTTGAAATGCCTTTTAAAATACACCTTGAAATATAAAATT
CGAATATAAAGTTGTCGTTTATAAAGTAAAAATGATTAAATATCTATGAA
AAGTATATAAAGGTATCTTTGCTCTGTAACCCGGTCTACGTTGACATTTA
GGATATTATGCAGTCTGTTTTATCCTTTCCTTTCCCTTCTTGGTGATCAG
CAAGATTTTCCATATTGGAGGAAAATTTCATAGACTCTCCTCTCGTACTT
TCCAATTCTGATTTTTCCTGCTTTTTACTACTGGTCTCTGACATCGCTTT
GTTATATTTATAGAAGTCTTTTTCTTTGAGGTCCCcctttttcttattct
ttttctTCCCTATTTCCTGTTCCTTTTCTGTGCCAATGTCATATTTGGCA
CGAATTCTACTTCGAAGTTTTTCTCTTTCCCTCTCGCGATCCGAGTACTG
TTCCTCGCGTTTTTCCTTCTGTTTCAAGCGCTTTTCACTCTCTTTTTCGA
CCTTTCTATCCAACTTTCTCTGTTCTTCCAACGTTAATTCGTCTGAATCA
CCTCCATCAGGAAGTTTGTAAGCTTTTTTTATGGATGCAAGCTTCTTAGC
AGCAACAATATCTGTGAAAGTAGATGCCATACCGCCTTTGTTCAAATCCC
TTTGGCTGATCAGTTGCACACTGAgtctttgtttacaaaaatctcCGTCC
TTTCCCTTTTTTAGGGGTTATTTTGAGGG Run BLAST on NCBI protein sequence of TCONS_00056047-protein >TCONS_00056047-protein ID=TCONS_00056047-protein|Name=TCONS_00056047-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MASTFTDIVAAKKLASIKKAYKLPDGGDSDELTLEEQRKLDRKVEKESEK
RLKQKEKREEQYSDREREREKLRSRIRAKYDIGTEKEQEIGKKKNKKKGD
LKEKDFYKYNKAMSETSSKKQEKSELESTRGESMKFSSNMENLADHQEGK
GKDKTDCIIS Run BLAST on NCBI transcript from alignment at scaffold_266:364485..365363 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056047 ID=TCONS_00056047|Name=TCONS_00056047|organism=Clytia hemisphaerica|type=transcript|length=879bp|location=Sequence derived from alignment at scaffold_266:364485..365363 (Clytia hemisphaerica)
CCCTCAAAATAACCCCTAAAAAAGGGAAAGGACGgagatttttgtaaaca
aagacTCAGTGTGCAACTGATCAGCCAAAGGGATTTGAACAAAGGCGGTA
TGGCATCTACTTTCACAGATATTGTTGCTGCTAAGAAGCTTGCATCCATA
AAAAAAGCTTACAAACTTCCTGATGGAGGTGATTCAGACGAATTAACGTT
GGAAGAACAGAGAAAGTTGGATAGAAAGGTCGAAAAAGAGAGTGAAAAGC
GCTTGAAACAGAAGGAAAAACGCGAGGAACAGTACTCGGATCGCGAGAGG
GAAAGAGAAAAACTTCGAAGTAGAATTCGTGCCAAATATGACATTGGCAC
AGAAAAGGAACAGGAAATAGGGAagaaaaagaataagaaaaaggGGGACC
TCAAAGAAAAAGACTTCTATAAATATAACAAAGCGATGTCAGAGACCAGT
AGTAAAAAGCAGGAAAAATCAGAATTGGAAAGTACGAGAGGAGAGTCTAT
GAAATTTTCCTCCAATATGGAAAATCTTGCTGATCACCAAGAAGGGAAAG
GAAAGGATAAAACAGACTGCATAATATCCTAAATGTCAACGTAGACCGGG
TTACAGAGCAAAGATACCTTTATATACTTTTCATAGATATTTAATCATTT
TTACTTTATAAACGACAACTTTATATTCGAATTTTATATTTCAAGGTGTA
TTTTAAAAGGCATTTCAAatgtattatattttttttatttttcaagattA
TTGTAAGATTTGTAAACTATGAAAGAGAGGCATATAAAATATGTAAACGA
TGAACGACGTactaaaaatttttgttactgTATTGCATTTTTCGTGTTGC
CAAATCAAACAGTGAGAGCATCTAAATTA Coding sequence (CDS) from alignment at scaffold_266:364485..365363 >TCONS_00056047 ID=TCONS_00056047|Name=TCONS_00056047|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_266:364485..365363 (Clytia hemisphaerica)
ATGGCATCTACTTTCACAGATATTGTTGCTGCTAAGAAGCTTGCATCCAT
AAAAAAAGCTTACAAACTTCCTGATGGAGGTGATTCAGACGAATTAACGT
TGGAAGAACAGAGAAAGTTGGATAGAAAGGTCGAAAAAGAGAGTGAAAAG
CGCTTGAAACAGAAGGAAAAACGCGAGGAACAGTACTCGGATCGCGAGAG
GGAAAGAGAAAAACTTCGAAGTAGAATTCGTGCCAAATATGACATTGGCA
CAGAAAAGGAACAGGAAATAGGGAagaaaaagaataagaaaaaggGGGAC
CTCAAAGAAAAAGACTTCTATAAATATAACAAAGCGATGTCAGAGACCAG
TAGTAAAAAGCAGGAAAAATCAGAATTGGAAAGTACGAGAGGAGAGTCTA
TGAAATTTTCCTCCAATATGGAAAATCTTGCTGATCACCAAGAAGGGAAA
GGAAAGGATAAAACAGACTGCATAATATCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056047-exon-scaffold_266-1491911889:364485..365363 | TCONS_00056047-exon-scaffold_266-1491911889:364485..365363 | Clytia hemisphaerica | exon |
| TCONS_00056047-exon-scaffold_266-1510915933:364485..365363 | TCONS_00056047-exon-scaffold_266-1510915933:364485..365363 | Clytia hemisphaerica | exon |
| TCONS_00056047-exon-scaffold_266-1575043694:364485..365363 | TCONS_00056047-exon-scaffold_266-1575043694:364485..365363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:364485..365363 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008849 | Synaphin |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0019905 | syntaxin binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006836 | neurotransmitter transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006836 |
neurotransmitter transport |
| molecular_function |
GO:0019905 |
syntaxin binding |
Blast
The following BLAST results are available for this feature:
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