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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056045 ID=TCONS_00056045|Name=TCONS_00056045|organism=Clytia hemisphaerica|type=transcript|length=2947bp
TGAAAATCTAATAAAATACATTACATTACCAACAGTAAGGTAAAATATAG
AAATTACCGAGGGAACAAGctatacttttatggacctacctatttaagTT
TAATGAAGGCAATGTAGAAACAAAAACGggataatttaaaattttgcaag
ttggtgccaacattttttttcaaaaaatgaactttttcatatttagcACA
ATTTAATTTTACGTCTTCGTACAAAACATTatgaaaaactaatgaacaga
tttttcacaaagtccaaaaaaccctattttggGGCATTTTTGGGCcctaa
aaattctttttttcgaaaaatgagctttttcatcatatttaaagtatatt
tcaaattagctggcagtaaaTTTCCAATTCcgtattacttttgatagatt
tcgaaTAAGATAGCGATTTTATACTTTTAGGAAAGCcaatccggagtgga
atattatgcgtagtataaaatttttctaaaattttcaaacacgaagatga
aaaacgaaaaagaaaaaaatctgctTTTTATCTAGCAATGCTATAACCAC
CATTTTTGGACTTGAGAAACTTCAATCTTTGCCCATGTCAGCTGTaaaat
tctttttcgaaaaaaataattcagtcGAAAGATATTGGACActacctcca
ggtaggtccaaaaataatgaaatgaaaatgaaagaaaatagtGAATTATA
GCTAAAAGATTTAAACTAACTCGGCGAAAGGAAAATCTAATTGATCGAAT
TACAAAGACGAATACCAATGGAACGCACTTTCATGGTTGACACCCAATTT
TGCTATAATTCTTCCATTTTCCTAAGGTTTCCTTTAAAATgttattcaaa
attcaaaatttcacaaCTTTACAGAATTAGGTTCGAAGAAAGACTGAAAT
ACAGTAGAATAAAGCTATAAAATATAGTAAAACCTTTCAAAATAATATAG
AACAAATTCaatgaaaacaaatgaaaacaatGACTATAAAAGGGAACTGG
GGAAAATAAGTTCAGTAACTGAGTAAATAATTATAACTCATTTTCAACCT
GCATGACCAGGGAGGCTCTCATTGCACCGATAATCCCACCAGAGAAATTC
GTCGGTCGTATATTGTCATTTTTGTGGTTCGAAAACCGGTCCATGAGAGG
ATGGAAGGCGCGTGTTGCTTCTTGGTAGTCTCGAAGAGCACCTGAAGCTA
CTTCCTTACGAAGCTCGGTAGGATCTTCTGGATAGTTTTCTTCATCGATA
TCCTTGACAACTTCACTTGCACGAGGGTGCATGAGTAGAGCCAACTCTTC
AGAGAAAGTACTATCACAGTGCCCCTGACATCTATCCAGAGTGAATGGGA
CTGACAAATTACCAAACTCCGCTCGACCCATCAGCTCCTCCACATATTCT
TGGTTAACTGTTTTTGATTTAACATCGAAGGGAACGGTAGCGACATCGCT
GTGACCTGTATGTTCCAAAAGATATTCCAATACACTTCCCATCTTCTTAC
TACTGACCTTAAGTTTAGGAAGCTTCTTGTCCAAAAAAGAGCTGTACTTT
CCTGCATTGCATTCGTTGTTACGAATAGTCTCATCAAGCAAATGAATCAA
AGTCATACCGTTCGGGTATACTCGCTCTAAGGGGTCAGCCCCTATCTCAA
CAAGTTCTTTGACCAACTCAAGTTGACCGAGCGTGGCAGCTAGCTGGAGT
GCTTTCGAATGATAACACGTTGGCATTGGTTCTACCAGGCCTGGAACAGA
TCCAAACTTCATTCCCTTTTTGTCTAAATGAAAACCAAAACCACCCAAtg
tcttaattgctgagcaacATTTAGTCACAAGACGTTTAGAGGGATTCCCA
ATGTCACTCAAGTTTGATACAATACAGTGGTACggacaaaaatcgatttt
ttcaaTCATGTTGTTTTCTTTGAGTTTGCCAGCCTCGTTATTGAGGTCTT
GGATGAATGACTTTGATTTGAGATCTTTAAAAACGTTCAAAAACGAAGTA
GAAGCTGATCCAACCATCTCAGCGTCATCTAACTTCTCTTGGAAATAATC
AGCTAGTTTTGTTTCAATGAGTCGAAGCTCTTTTAGGAAATCTCTTTTCT
CTTTACCGTTTTCGTTAGAATCTTTCCTTTTTGTGACTTTGTTTGATAAG
AAGCTTACTAATTGTTCTTGTAATTTCGTCAAGTTGAGGCTTTCTGAAAC
ATTTATCCCAGTCACGATTTCAGACAAGTTTAGTTTTTCATCATTTCCCC
AAGCATAATCCCAACCTTTTTCCTTGAAGTAATTCAAGATTTTGGTTTCA
ACAGCTTTCAATAAATCGTTTAATTGAGTCATGTGCGAGTATTTTAATAG
TTCTAGCATAAAGATAATGTCTGACTTTCTTTCTGACGTCCAGTCCAGCT
TTCCCAAGTAGAGAAACTCTCTGACAGCAGAAAACACTTCCAAACTAACG
tcttttaacaaaattttacgACCCTCCATTTTCGTAAGGGATGATTGGAT
TAAACGTTTGAAATACTCACTTTGACCAAGGATGACTTTGTGGCAAAGAA
CTATATTTTTTCCAATTACAATCTCCAAATCACAAAAATCCTTGTCCTcc
atcaatgttcttaatttttccaaaggaacgccatcatcatcatctttttT
TTGTTCCTCCTCTCCATCAATAATGACTTTAGATTTACATTTCAAATTAA
TGTACAATGAGTTTTCCAACTCCTGAAAGGTGACTGACGTTGGatcagaa
atgtcatcaatcTTCCAAAAAAGATCGTTGCGATTAGATGCTTCAATCAG
CGACAGGGTAAAGTCTGCCCAGCGAACTGCGTAGATTGGCATTGTTGTTT
GTTTATTAATTGTTTCTATTACagctaaaaataaagaaaacaattcactt
taaattaaactaaaacaaaaCACGAGAAAATATATCGGAAAAACGAG Run BLAST on NCBI protein sequence of TCONS_00056045-protein >TCONS_00056045-protein ID=TCONS_00056045-protein|Name=TCONS_00056045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MPIYAVRWADFTLSLIEASNRNDLFWKIDDISDPTSVTFQELENSLYINL
KCKSKVIIDGEEEQKKDDDDGVPLEKLRTLMEDKDFCDLEIVIGKNIVLC
HKVILGQSEYFKRLIQSSLTKMEGRKILLKDVSLEVFSAVREFLYLGKLD
WTSERKSDIIFMLELLKYSHMTQLNDLLKAVETKILNYFKEKGWDYAWGN
DEKLNLSEIVTGINVSESLNLTKLQEQLVSFLSNKVTKRKDSNENGKEKR
DFLKELRLIETKLADYFQEKLDDAEMVGSASTSFLNVFKDLKSKSFIQDL
NNEAGKLKENNMIEKIDFCPYHCIVSNLSDIGNPSKRLVTKCCSAIKTLG
GFGFHLDKKGMKFGSVPGLVEPMPTCYHSKALQLAATLGQLELVKELVEI
GADPLERVYPNGMTLIHLLDETIRNNECNAGKYSSFLDKKLPKLKVSSKK
MGSVLEYLLEHTGHSDVATVPFDVKSKTVNQEYVEELMGRAEFGNLSVPF
TLDRCQGHCDSTFSEELALLMHPRASEVVKDIDEENYPEDPTELRKEVAS
GALRDYQEATRAFHPLMDRFSNHKNDNIRPTNFSGGIIGAMRASLVMQVE
NEL Run BLAST on NCBI transcript from alignment at scaffold_266:324193..327139 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056045 ID=TCONS_00056045|Name=TCONS_00056045|organism=Clytia hemisphaerica|type=transcript|length=2947bp|location=Sequence derived from alignment at scaffold_266:324193..327139 (Clytia hemisphaerica)
CTCGTTTTTCCGATATATTTTCTCGTGttttgttttagtttaatttaaag
tgaattgttttctttatttttagctGTAATAGAAACAATTAATAAACAAA
CAACAATGCCAATCTACGCAGTTCGCTGGGCAGACTTTACCCTGTCGCTG
ATTGAAGCATCTAATCGCAACGATCTTTTTTGGAAgattgatgacatttc
tgatCCAACGTCAGTCACCTTTCAGGAGTTGGAAAACTCATTGTACATTA
ATTTGAAATGTAAATCTAAAGTCATTATTGATGGAGAGGAGGAACAAAaa
aaagatgatgatgatggcgttcctttggaaaaattaagaacattgatggA
GGACAAGGATTTTTGTGATTTGGAGATTGTAATTGGAAAAAATATAGTTC
TTTGCCACAAAGTCATCCTTGGTCAAAGTGAGTATTTCAAACGTTTAATC
CAATCATCCCTTACGAAAATGGAGGGTcgtaaaattttgttaaaagaCGT
TAGTTTGGAAGTGTTTTCTGCTGTCAGAGAGTTTCTCTACTTGGGAAAGC
TGGACTGGACGTCAGAAAGAAAGTCAGACATTATCTTTATGCTAGAACTA
TTAAAATACTCGCACATGACTCAATTAAACGATTTATTGAAAGCTGTTGA
AACCAAAATCTTGAATTACTTCAAGGAAAAAGGTTGGGATTATGCTTGGG
GAAATGATGAAAAACTAAACTTGTCTGAAATCGTGACTGGGATAAATGTT
TCAGAAAGCCTCAACTTGACGAAATTACAAGAACAATTAGTAAGCTTCTT
ATCAAACAAAGTCACAAAAAGGAAAGATTCTAACGAAAACGGTAAAGAGA
AAAGAGATTTCCTAAAAGAGCTTCGACTCATTGAAACAAAACTAGCTGAT
TATTTCCAAGAGAAGTTAGATGACGCTGAGATGGTTGGATCAGCTTCTAC
TTCGTTTTTGAACGTTTTTAAAGATCTCAAATCAAAGTCATTCATCCAAG
ACCTCAATAACGAGGCTGGCAAACTCAAAGAAAACAACATGAttgaaaaa
atcgatttttgtccGTACCACTGTATTGTATCAAACTTGAGTGACATTGG
GAATCCCTCTAAACGTCTTGTGACTAAATgttgctcagcaattaagacaT
TGGGTGGTTTTGGTTTTCATTTAGACAAAAAGGGAATGAAGTTTGGATCT
GTTCCAGGCCTGGTAGAACCAATGCCAACGTGTTATCATTCGAAAGCACT
CCAGCTAGCTGCCACGCTCGGTCAACTTGAGTTGGTCAAAGAACTTGTTG
AGATAGGGGCTGACCCCTTAGAGCGAGTATACCCGAACGGTATGACTTTG
ATTCATTTGCTTGATGAGACTATTCGTAACAACGAATGCAATGCAGGAAA
GTACAGCTCTTTTTTGGACAAGAAGCTTCCTAAACTTAAGGTCAGTAGTA
AGAAGATGGGAAGTGTATTGGAATATCTTTTGGAACATACAGGTCACAGC
GATGTCGCTACCGTTCCCTTCGATGTTAAATCAAAAACAGTTAACCAAGA
ATATGTGGAGGAGCTGATGGGTCGAGCGGAGTTTGGTAATTTGTCAGTCC
CATTCACTCTGGATAGATGTCAGGGGCACTGTGATAGTACTTTCTCTGAA
GAGTTGGCTCTACTCATGCACCCTCGTGCAAGTGAAGTTGTCAAGGATAT
CGATGAAGAAAACTATCCAGAAGATCCTACCGAGCTTCGTAAGGAAGTAG
CTTCAGGTGCTCTTCGAGACTACCAAGAAGCAACACGCGCCTTCCATCCT
CTCATGGACCGGTTTTCGAACCACAAAAATGACAATATACGACCGACGAA
TTTCTCTGGTGGGATTATCGGTGCAATGAGAGCCTCCCTGGTCATGCAGG
TTGAAAATGAGTTATAATTATTTACTCAGTTACTGAACTTATTTTCCCCA
GTTCCCTTTTATAGTCattgttttcatttgttttcattGAATTTGTTCTA
TATTATTTTGAAAGGTTTTACTATATTTTATAGCTTTATTCTACTGTATT
TCAGTCTTTCTTCGAACCTAATTCTGTAAAGttgtgaaattttgaatttt
gaataacATTTTAAAGGAAACCTTAGGAAAATGGAAGAATTATAGCAAAA
TTGGGTGTCAACCATGAAAGTGCGTTCCATTGGTATTCGTCTTTGTAATT
CGATCAATTAGATTTTCCTTTCGCCGAGTTAGTTTAAATCTTTTAGCTAT
AATTCactattttctttcattttcatttcattatttttggacctacctgg
aggtagTGTCCAATATCTTTCgactgaattatttttttcgaaaaagaatt
ttACAGCTGACATGGGCAAAGATTGAAGTTTCTCAAGTCCAAAAATGGTG
GTTATAGCATTGCTAGATAAAAagcagatttttttctttttcgtttttca
tcttcgtgtttgaaaattttagaaaaattttatactacgcataatattcc
actccggattgGCTTTCCTAAAAGTATAAAATCGCTATCTTAttcgaaat
ctatcaaaagtaatacgGAATTGGAAAtttactgccagctaatttgaaat
atactttaaatatgatgaaaaagctcatttttcgaaaaaaagaattttta
ggGCCCAAAAATGCCccaaaatagggttttttggactttgtgaaaaatct
gttcattagtttttcatAATGTTTTGTACGAAGACGTAAAATTAAATTGT
gctaaatatgaaaaagttcattttttgaaaaaaaatgttggcaccaactt
gcaaaattttaaattatccCGTTTTTGTTTCTACATTGCCTTCATTAAAc
ttaaataggtaggtccataaaagtatagCTTGTTCCCTCGGTAATTTCTA
TATTTTACCTTACTGTTGGTAATGTAATGTATTTTATTAGATTTTCA Coding sequence (CDS) from alignment at scaffold_266:324193..327139 >TCONS_00056045 ID=TCONS_00056045|Name=TCONS_00056045|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at scaffold_266:324193..327139 (Clytia hemisphaerica)
ATGCCAATCTACGCAGTTCGCTGGGCAGACTTTACCCTGTCGCTGATTGA
AGCATCTAATCGCAACGATCTTTTTTGGAAgattgatgacatttctgatC
CAACGTCAGTCACCTTTCAGGAGTTGGAAAACTCATTGTACATTAATTTG
AAATGTAAATCTAAAGTCATTATTGATGGAGAGGAGGAACAAAaaaaaga
tgatgatgatggcgttcctttggaaaaattaagaacattgatggAGGACA
AGGATTTTTGTGATTTGGAGATTGTAATTGGAAAAAATATAGTTCTTTGC
CACAAAGTCATCCTTGGTCAAAGTGAGTATTTCAAACGTTTAATCCAATC
ATCCCTTACGAAAATGGAGGGTcgtaaaattttgttaaaagaCGTTAGTT
TGGAAGTGTTTTCTGCTGTCAGAGAGTTTCTCTACTTGGGAAAGCTGGAC
TGGACGTCAGAAAGAAAGTCAGACATTATCTTTATGCTAGAACTATTAAA
ATACTCGCACATGACTCAATTAAACGATTTATTGAAAGCTGTTGAAACCA
AAATCTTGAATTACTTCAAGGAAAAAGGTTGGGATTATGCTTGGGGAAAT
GATGAAAAACTAAACTTGTCTGAAATCGTGACTGGGATAAATGTTTCAGA
AAGCCTCAACTTGACGAAATTACAAGAACAATTAGTAAGCTTCTTATCAA
ACAAAGTCACAAAAAGGAAAGATTCTAACGAAAACGGTAAAGAGAAAAGA
GATTTCCTAAAAGAGCTTCGACTCATTGAAACAAAACTAGCTGATTATTT
CCAAGAGAAGTTAGATGACGCTGAGATGGTTGGATCAGCTTCTACTTCGT
TTTTGAACGTTTTTAAAGATCTCAAATCAAAGTCATTCATCCAAGACCTC
AATAACGAGGCTGGCAAACTCAAAGAAAACAACATGAttgaaaaaatcga
tttttgtccGTACCACTGTATTGTATCAAACTTGAGTGACATTGGGAATC
CCTCTAAACGTCTTGTGACTAAATgttgctcagcaattaagacaTTGGGT
GGTTTTGGTTTTCATTTAGACAAAAAGGGAATGAAGTTTGGATCTGTTCC
AGGCCTGGTAGAACCAATGCCAACGTGTTATCATTCGAAAGCACTCCAGC
TAGCTGCCACGCTCGGTCAACTTGAGTTGGTCAAAGAACTTGTTGAGATA
GGGGCTGACCCCTTAGAGCGAGTATACCCGAACGGTATGACTTTGATTCA
TTTGCTTGATGAGACTATTCGTAACAACGAATGCAATGCAGGAAAGTACA
GCTCTTTTTTGGACAAGAAGCTTCCTAAACTTAAGGTCAGTAGTAAGAAG
ATGGGAAGTGTATTGGAATATCTTTTGGAACATACAGGTCACAGCGATGT
CGCTACCGTTCCCTTCGATGTTAAATCAAAAACAGTTAACCAAGAATATG
TGGAGGAGCTGATGGGTCGAGCGGAGTTTGGTAATTTGTCAGTCCCATTC
ACTCTGGATAGATGTCAGGGGCACTGTGATAGTACTTTCTCTGAAGAGTT
GGCTCTACTCATGCACCCTCGTGCAAGTGAAGTTGTCAAGGATATCGATG
AAGAAAACTATCCAGAAGATCCTACCGAGCTTCGTAAGGAAGTAGCTTCA
GGTGCTCTTCGAGACTACCAAGAAGCAACACGCGCCTTCCATCCTCTCAT
GGACCGGTTTTCGAACCACAAAAATGACAATATACGACCGACGAATTTCT
CTGGTGGGATTATCGGTGCAATGAGAGCCTCCCTGGTCATGCAGGTTGAA
AATGAGTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056045-exon-scaffold_266-1491911889:324193..327139 | TCONS_00056045-exon-scaffold_266-1491911889:324193..327139 | Clytia hemisphaerica | exon |
| TCONS_00056045-exon-scaffold_266-1510915933:324193..327139 | TCONS_00056045-exon-scaffold_266-1510915933:324193..327139 | Clytia hemisphaerica | exon |
| TCONS_00056045-exon-scaffold_266-1575043694:324193..327139 | TCONS_00056045-exon-scaffold_266-1575043694:324193..327139 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:324193..327139 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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