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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055984 ID=TCONS_00055984|Name=TCONS_00055984|organism=Clytia hemisphaerica|type=transcript|length=2394bpRun BLAST on NCBI protein sequence of TCONS_00055984-protein >TCONS_00055984-protein ID=TCONS_00055984-protein|Name=TCONS_00055984-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp MLACRCLQRPNIIRNLQRSVNIYKREVASASILSRCTNKEQTERTLSKNLRun BLAST on NCBI transcript from alignment at scaffold_266:122722..136806- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055984 ID=TCONS_00055984|Name=TCONS_00055984|organism=Clytia hemisphaerica|type=transcript|length=14085bp|location=Sequence derived from alignment at scaffold_266:122722..136806- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:122722..136806- >TCONS_00055984 ID=TCONS_00055984|Name=TCONS_00055984|organism=Clytia hemisphaerica|type=CDS|length=18369bp|location=Sequence derived from alignment at scaffold_266:122722..136806- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055984 vs. Swiss-Prot (Human)
Match: ODO2 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=4) HSP 1 Score: 377.481 bits (968), Expect = 1.138e-121 Identity = 180/236 (76.27%), Postives = 204/236 (86.44%), Query Frame = 1
Query: 970 GTRNETKVKMNRMRQRIAQRLKEAQNINAMLTTFNEIDMSNAMKIRNQYKDLFLKKHNMKLGFMSPFLKASSTALEQMPTVNAVIEDNY--VIYRDFVDISVAVATPKGLVVPVLRDVNKMNFADIERGMNALGEKARSGSLAIEDMDGGTFTISNGGVFGSLMGTPIINPPQSAILGMHGIFDRPVAVNGKVEIRPMMYVALTYDHRLVDGREAVTFLRKIKQNVEDPAAMFLDL 1671
G R+E + KMNRMRQRIAQRLKEAQN AMLTTFNEIDMSN ++R ++K+ FLKKHN+KLGFMS F+KAS+ AL++ P VNAVI+D V+YRD++DISVAVATP+GLVVPV+R+V MNFADIER + LGEKAR LAIEDMDGGTFTISNGGVFGSL GTPIINPPQSAILGMHGIFDRPVA+ GKVE+RPMMYVALTYDHRL+DGREAVTFLRKIK VEDP + LDL
Sbjct: 218 GLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 453 HSP 2 Score: 103.605 bits (257), Expect = 2.728e-23 Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 454 FQTSAFSFDDEFQIVSTPPFAESITEGDVRWEKEVGDSVGVDEVIGEIETDKTSLPIVSPAAGVIEEIFVEDGGRVEKNDQLFKLK 711
F+T+A DD V TP FAES+TEGDVRWEK VGD+V DEV+ EIETDKTS+ + SPA GVIE + V DGG+VE LF L+
Sbjct: 60 FRTTAVCKDD-LVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLR 144 The following BLAST results are available for this feature:
BLAST of TCONS_00055984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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