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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055972 ID=TCONS_00055972|Name=TCONS_00055972|organism=Clytia hemisphaerica|type=transcript|length=4455bpRun BLAST on NCBI protein sequence of TCONS_00055972-protein >TCONS_00055972-protein ID=TCONS_00055972-protein|Name=TCONS_00055972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=927bp MKAHQTRCITWCLAFVLIAQVSAQSAAWDKWGVWSNCTRPCGGGVTQRSRRun BLAST on NCBI transcript from alignment at scaffold_266:77564..116466- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055972 ID=TCONS_00055972|Name=TCONS_00055972|organism=Clytia hemisphaerica|type=transcript|length=38903bp|location=Sequence derived from alignment at scaffold_266:77564..116466- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:77564..116466- >TCONS_00055972 ID=TCONS_00055972|Name=TCONS_00055972|organism=Clytia hemisphaerica|type=CDS|length=58464bp|location=Sequence derived from alignment at scaffold_266:77564..116466- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055972 vs. Swiss-Prot (Human)
Match: ATS6 (A disintegrin and metalloproteinase with thrombospondin motifs 6 OS=Homo sapiens GN=ADAMTS6 PE=2 SV=2) HSP 1 Score: 308.916 bits (790), Expect = 8.712e-87 Identity = 178/523 (34.03%), Postives = 261/523 (49.90%), Query Frame = 2
Query: 1064 AAWDKWGVWSNCTRPCGGGVTQRSRQCIGES---DGLSCEGKSVEYSMCNIQDCPDGTPNFRMKQCSAYDNKPFKGKIFRWASFTHGAGE-CELKCMPKKHFFYVTFKDKVIDGTRCNPYTLDVCINGTCQPVGCDNQLFSDAKFDECGVCRGDGSTCVQLKDTYKPIEGAYGYVKVTKIAEGATSVYIKENGDPDMYLALTTSSGKNVLNGDYIFTSPRKMKLHGNIMHYER-NAQVNQITIDGPTEVPLQLKVFVMEGSEQQNNISFQYMLPKADAPIEQPKRAE----YVYVENEWTECTKSCATGFRSRSYFCANRVTKEKVEAFYCNNLQRPVTRER-CNTQSCPARWYISQWAACSTTCGRGLRARRVHCVRTQPDGNIEMLSLEKCPGETPRRVEVCVDQGSCPKWFANEWSQCSQSCGNGVQTRQVECMSME-DNSVEATKCSEAEKPIIQQPCHNAPC-GSLWKTGPWRECSAECGRGMRMRQVTCENSEGFEVPASFCDKENEPKHYEECTAE 2596
W W +W C+R CGGGV+ R C + G C G+ Y CN CP G+ +FR KQC+ +DN PF+GK + W +T G + C L C+ + + FY VIDGT+CN +LD+CING C+ VGCDN L SDA+ D C VC GDGSTC ++ + GY++V +I G+ + ++E Y+AL + +NG + PRK + G HY+R + + GPT L + V + Q+ N+ +Y K + PI + + + + W+EC+ +CA G + + C V+ YC+ +P +R CNT+ CP W+I W CS TC G+R R V C+R E L C P E C +Q P+W A +WS+C+ CG G + R V C S + + A +C E KP ++ C C W TG W +CSA+CG G +MR V C + G +S C + P ++C ++
Sbjct: 559 GGWGPWSLWGECSRTCGGGVSSSLRHCDSPAPSGGGKYCLGERKRYRSCNTDPCPLGSRDFREKQCADFDNMPFRGKYYNWKPYTGGGVKPCALNCLAEGYNFYTERAPAVIDGTQCNADSLDICINGECKHVGCDNILGSDAREDRCRVCGGDGSTCDAIEGFFNDSLPRGGYMEVVQIPRGSVHIEVREVAMSKNYIALKSEGDDYYINGAWTIDWPRKFDVAGTAFHYKRPTDEPESLEALGPTSENLIVMVLL-----QEQNLGIRY---KFNVPITRTGSGDNEVGFTWNHQPWSECSATCAGGVQRQEVVCKRLDDNSIVQNNYCDPDSKPPENQRACNTEPCPPEWFIGDWLECSKTCDGGMRTRAVLCIRKIGPSEEETLDYSGCLTHRPVEKEPCNNQSCPPQWVALDWSECTPKCGPGFKHRIVLCKSSDLSKTFPAAQCPEESKPPVRIRCSLGRCPPPRWVTGDWGQCSAQCGLGQQMRTVQCLSYTG--QASSDCLETVRPPSMQQCESK 1071 HSP 2 Score: 113.235 bits (282), Expect = 5.076e-25 Identity = 80/245 (32.65%), Postives = 117/245 (47.76%), Query Frame = 2
Query: 2270 WFANEWSQCSQSCGNGVQTRQVECMSMEDNS-VEATKCS-EAEKPIIQQPCHNAPCGSLWKTGPWRECSAECGRGMRMRQVTCEN----SEGFEVPASFCDKENEPKHYEECTAEEGECKPRWQTTMWSKCSSKCGRGMQYRSSYCTLLNPELNRMSVLKNTECPSDEQPIVVRRCKNEKPCRVRYFVSRWSKCSVSCGTGIAKRTIQCYADRNIDYSKHA---CAKLQEPISFKLCDMPKCDGS 2977
W WS+CS +C GVQ ++V C ++DNS V+ C +++ P Q+ C+ PC W G W ECS C GMR R V C SE + S C + P E C + C P+W WS+C+ KCG G ++R C + +L++ +CP + +P V RC + R+ W +CS CG G RT+QC + Y+ A C + P S + C+ KCD +
Sbjct: 844 WNHQPWSECSATCAGGVQRQEVVCKRLDDNSIVQNNYCDPDSKPPENQRACNTEPCPPEWFIGDWLECSKTCDGGMRTRAVLCIRKIGPSEEETLDYSGC-LTHRPVEKEPCNNQS--CPPQWVALDWSECTPKCGPGFKHRIVLCK--SSDLSK--TFPAAQCPEESKPPVRIRCSLGRCPPPRWVTGDWGQCSAQCGLGQQMRTVQC-----LSYTGQASSDCLETVRPPSMQQCE-SKCDST 1075 The following BLAST results are available for this feature:
BLAST of TCONS_00055972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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