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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055967 ID=TCONS_00055967|Name=TCONS_00055967|organism=Clytia hemisphaerica|type=transcript|length=995bp
AAAGAACCATCAAATTTTACGGATCATCATAAATTCTTATTCGAACAATG
TCTAACATAAAAAGGTATAAAAGCTCGATCAAAATTTGTCTGACACATGA
GTACATTTTGGTGAGAAGAGAGAAAGAGTTAAAGGTTAATTGAACGCTGA
AAAGTTTTCCGTCAGTAAAGAAGATGAAGATTCAATTAGCTTTCTTCCTC
GTTTTAGTTGGGTTGGCATTGTCCGAAGCTGGCAAAGGTAAAGGGAAAAG
AAGGAATCGGTTGGCGCAAGCATGCAAAACCTGGACCAAAAGATGTCAGA
CATCTTTAGAGAAAGGTGCGGACAAGAAAATGTTTTGTGTATTTGATGGA
GAAAAGTATATAGATGTGGAGGACACTTTTGCATGCATCAAGAAGGACGT
CATGGTTTGCAGCAGGGAGAAAAAGGTGGTCCACCCTGGATCATGCGGTC
AATGTGATGAATCTTTGTTTtgtaaagagaaaaataaaccaAAGAAAGCA
GGCAAAAGAGCGGGCAAAAAAAATAAGGGAcgcaaaaacaacaagaaaaa
agGAGGTCGAAGAGGAATGAAACAAGTTTGTGATCAAACCGGTAAAACAT
ACGAAAGACGTTGCGATCTCCATATGGCAAGATGTCAAGGTGTCGCCGAA
AACATTCCCTTCGCTGATCTCCCAAAATACTCGCCAAGAAAATGCCCAGC
AGTGGAACCAGAAGCTAACCAAGCTTGAAAATACGATATCGTGAAATGTC
AAGGGGCTTCAAATGTGTAAATAATTTTTAACAATGTTATTTGCGATTTT
CTGAGTGAGGAAGTATTGAATTGATTCCTTTTTATTATATGACCCTTCCA
tgggaatttattttcaaattttagaatattTAATCTTGTTATTTTAGACG
AATTGATACaaaagagatttcaaataaatcGGTTGTTATCTTTCCTACTT
AATCTTCATCGATAAGACAAAGAATGTCAAACGAGGGGAACCACT Run BLAST on NCBI protein sequence of TCONS_00055967-protein >TCONS_00055967-protein ID=TCONS_00055967-protein|Name=TCONS_00055967-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MKIQLAFFLVLVGLALSEAGKGKGKRRNRLAQACKTWTKRCQTSLEKGAD
KKMFCVFDGEKYIDVEDTFACIKKDVMVCSREKKVVHPGSCGQCDESLFC
KEKNKPKKAGKRAGKKNKGRKNNKKKGGRRGMKQVCDQTGKTYERRCDLH
MARCQGVAENIPFADLPKYSPRKCPAVEPEANQA Run BLAST on NCBI transcript from alignment at scaffold_266:58195..59960- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055967 ID=TCONS_00055967|Name=TCONS_00055967|organism=Clytia hemisphaerica|type=transcript|length=1766bp|location=Sequence derived from alignment at scaffold_266:58195..59960- (Clytia hemisphaerica)
AAAGAACCATCAAATTTTACGGATCATCATAAATTCTTATTCGAACAATG
TCTAACATAAAAAGGTATAAAAGCTCGATCAAAATTTGTCTGACACATGA
GTACATTTTGGTGAGAAGAGAGAAAGAGTTAAAGGTTAATTGAACGCTGA
AAAGTTTTCCGTCAGTAAAGAAGATGAAGATTCAATTAGCTTTCTTCCTC
GTTTTAGTTGGTAAGAAACTTTTCTTAGTCCTCTTTTTCAGATTGGAAGG
CTTATGAATTCAAATATAGAAGGTTTGGACCCTTTACCAAAATTTCAGTA
CGCCTATCGTTTGTCGCAGTAAACTTTCTCAATAAATTTTGCATAAGCAG
ATCGAGCTAAGGATGTTTGACTGTTGCATTGTTGATTTTTGTCAATTTCT
GATAATCAGTCTATGCCTTGATTTCTAGGGTTGGCATTGTCCGAAGCTGG
CAAAGGTAAAGGGAAAAGAAGGAATCGGTTGGCGCAAGCATGCAAAACCT
GGACCAAAAGATGTCAGACATCTTTAGAGAAAGGTGCGGACAAGAAAATG
TTTTGTGTATTTGATGGAGAAAAGTATATAGATGTGGAGGACACTTTTGC
ATGCATCAAGAAGGACGTCATGGTTTGCAGCAGGGAGAAAAAGGTGGTCC
ACCCTGGATCATGCGGTCAATGTGATGAATCTTTGTTTTGTAAAGAGAAA
AATAAACCAAAGAAAGCAGGCAAAAGAGCGGGCAAAAAAAATAAGGGACG
CAAAAACAACAAGAAAAAAGGAGGTCGAAGAGGAATGAAACAAGTTTGTG
ATCAAACCGGTAAAACATACGAAAGACGTTGCGATCTCCATATGGCAAGA
TGTCAAGGTGTCGCCGAAAACATTCCCTTCGCTGATCTCCCAAAATACTC
GCCAAGAAGTAAGTCCTTTCTGCCACTTAAATAAATCAATACACCACTGT
CTCGCACAGCCCCGGCGGAACGTTTTCCCACAGCGGGGTTAAAGTTTTAT
TGCAGAATCCCAATACGGATAGATTGTTCAAAATATAAAGAATCCAGTGG
GTTTTTTTTGGAGTGCAATTTTTTACAATTAATTTCGAATGATGATGTAA
TCAAAGTCTGTTTCACAGTGGGCCGAAACTTTGGGTATTTCTACCATGGG
AGGCGAAATTTTGACCAAATCTTTTATTTGGGCTGGGGTCCCAGCGGGTC
TGTGAAACAGGAGTGTATCAATGCTTTATTAGCCAAAAAAGTTCTTCTAC
TTTTATCTCCGAGAAAGTTTCAATAAGTCTCAAGAAGCCTTCATATTGAC
ATAGTTAAAAGGTTGACATTTAATCACATTTTTCTAAAACTATAAAACTT
GGATAGGGGCATTATGATAAACTCCATTCAAGGGGTTTGGCATTGAATAA
GAAATGCAGATTTACCATCTCAACGTGAAGAATCTCTAATAATCAATTTT
TCTTTCTCTAGAATGCCCAGCAGTGGAACCAGAAGCTAACCAAGCTTGAA
AATACGATATCGTGAAATGTCAAGGGGCTTCAAATGTGTAAATAATTTTT
AACAATGTTATTTGCGATTTTCTGAGTGAGGAAGTATTGAATTGATTCCT
TTTTATTATATGACCCTTCCATGGGAATTTATTTTCAAATTTTAGAATAT
TTAATCTTGTTATTTTAGACGAATTGATACAAAAGAGATTTCAAATAAAT
CGGTTGTTATCTTTCCTACTTAATCTTCATCGATAAGACAAAGAATGTCA
AACGAGGGGAACCACT Coding sequence (CDS) from alignment at scaffold_266:58195..59960- >TCONS_00055967 ID=TCONS_00055967|Name=TCONS_00055967|organism=Clytia hemisphaerica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_266:58195..59960- (Clytia hemisphaerica)
AATGCCCAGCAGTGGAACCAGAAGCTAACCAAGCTTGAGGTTGGCATTGT
CCGAAGCTGGCAAAGGTAAAGGGAAAAGAAGGAATCGGTTGGCGCAAGCA
TGCAAAACCTGGACCAAAAGATGTCAGACATCTTTAGAGAAAGGTGCGGA
CAAGAAAATGTTTTGTGTATTTGATGGAGAAAAGTATATAGATGTGGAGG
ACACTTTTGCATGCATCAAGAAGGACGTCATGGTTTGCAGCAGGGAGAAA
AAGGTGGTCCACCCTGGATCATGCGGTCAATGTGATGAATCTTTGTTTTG
TAAAGAGAAAAATAAACCAAAGAAAGCAGGCAAAAGAGCGGGCAAAAAAA
ATAAGGGACGCAAAAACAACAAGAAAAAAGGAGGTCGAAGAGGAATGAAA
CAAGTTTGTGATCAAACCGGTAAAACATACGAAAGACGTTGCGATCTCCA
TATGGCAAGATGTCAAGGTGTCGCCGAAAACATTCCCTTCGCTGATCTCC
CAAAATACTCGCCAAGAAATGAAGATTCAATTAGCTTTCTTCCTCGTTTT
AGTTGAATGCCCAGCAGTGGAACCAGAAGCTAACCAAGCTTGAGGTTGGC
ATTGTCCGAAGCTGGCAAAGGTAAAGGGAAAAGAAGGAATCGGTTGGCGC
AAGCATGCAAAACCTGGACCAAAAGATGTCAGACATCTTTAGAGAAAGGT
GCGGACAAGAAAATGTTTTGTGTATTTGATGGAGAAAAGTATATAGATGT
GGAGGACACTTTTGCATGCATCAAGAAGGACGTCATGGTTTGCAGCAGGG
AGAAAAAGGTGGTCCACCCTGGATCATGCGGTCAATGTGATGAATCTTTG
TTTTGTAAAGAGAAAAATAAACCAAAGAAAGCAGGCAAAAGAGCGGGCAA
AAAAAATAAGGGACGCAAAAACAACAAGAAAAAAGGAGGTCGAAGAGGAA
TGAAACAAGTTTGTGATCAAACCGGTAAAACATACGAAAGACGTTGCGAT
CTCCATATGGCAAGATGTCAAGGTGTCGCCGAAAACATTCCCTTCGCTGA
TCTCCCAAAATACTCGCCAAGAAATGAAGATTCAATTAGCTTTCTTCCTC
GTTTTAGTTGAATGCCCAGCAGTGGAACCAGAAGCTAACCAAGCTTGAGG
TTGGCATTGTCCGAAGCTGGCAAAGGTAAAGGGAAAAGAAGGAATCGGTT
GGCGCAAGCATGCAAAACCTGGACCAAAAGATGTCAGACATCTTTAGAGA
AAGGTGCGGACAAGAAAATGTTTTGTGTATTTGATGGAGAAAAGTATATA
GATGTGGAGGACACTTTTGCATGCATCAAGAAGGACGTCATGGTTTGCAG
CAGGGAGAAAAAGGTGGTCCACCCTGGATCATGCGGTCAATGTGATGAAT
CTTTGTTTTGTAAAGAGAAAAATAAACCAAAGAAAGCAGGCAAAAGAGCG
GGCAAAAAAAATAAGGGACGCAAAAACAACAAGAAAAAAGGAGGTCGAAG
AGGAATGAAACAAGTTTGTGATCAAACCGGTAAAACATACGAAAGACGTT
GCGATCTCCATATGGCAAGATGTCAAGGTGTCGCCGAAAACATTCCCTTC
GCTGATCTCCCAAAATACTCGCCAAGAAATGAAGATTCAATTAGCTTTCT
TCCTCGTTTTAGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055967-exon-scaffold_266-1575043694:59751..59960 | TCONS_00055967-exon-scaffold_266-1575043694:59751..59960 | Clytia hemisphaerica | exon |
| TCONS_00055967-exon-scaffold_266-1575043694:59053..59532 | TCONS_00055967-exon-scaffold_266-1575043694:59053..59532 | Clytia hemisphaerica | exon |
| TCONS_00055967-exon-scaffold_266-1575043694:58195..58499 | TCONS_00055967-exon-scaffold_266-1575043694:58195..58499 | Clytia hemisphaerica | exon |
| TCONS_00055967-exon-scaffold_266-1510915933:59751..59960 | TCONS_00055967-exon-scaffold_266-1510915933:59751..59960 | Clytia hemisphaerica | exon |
| TCONS_00055967-exon-scaffold_266-1510915933:59053..59532 | TCONS_00055967-exon-scaffold_266-1510915933:59053..59532 | Clytia hemisphaerica | exon |
| TCONS_00055967-exon-scaffold_266-1510915933:58195..58499 | TCONS_00055967-exon-scaffold_266-1510915933:58195..58499 | Clytia hemisphaerica | exon |
| TCONS_00055967-exon-scaffold_266-1491911889:59751..59960 | TCONS_00055967-exon-scaffold_266-1491911889:59751..59960 | Clytia hemisphaerica | exon |
| TCONS_00055967-exon-scaffold_266-1491911889:59053..59532 | TCONS_00055967-exon-scaffold_266-1491911889:59053..59532 | Clytia hemisphaerica | exon |
| TCONS_00055967-exon-scaffold_266-1491911889:58195..58499 | TCONS_00055967-exon-scaffold_266-1491911889:58195..58499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:58195..59960 - |
Blast
The following BLAST results are available for this feature:
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