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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055962 ID=TCONS_00055962|Name=TCONS_00055962|organism=Clytia hemisphaerica|type=transcript|length=1817bpRun BLAST on NCBI protein sequence of TCONS_00055962-protein >TCONS_00055962-protein ID=TCONS_00055962-protein|Name=TCONS_00055962-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp MYKQKREKFKRRTVVDEIKAILQQYPDDGQIFKEIIQNAEDARASEIVFVRun BLAST on NCBI transcript from alignment at scaffold_266:646747..658015+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055962 ID=TCONS_00055962|Name=TCONS_00055962|organism=Clytia hemisphaerica|type=transcript|length=11269bp|location=Sequence derived from alignment at scaffold_266:646747..658015+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:646747..658015+ >TCONS_00055962 ID=TCONS_00055962|Name=TCONS_00055962|organism=Clytia hemisphaerica|type=CDS|length=13080bp|location=Sequence derived from alignment at scaffold_266:646747..658015+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00055962 vs. Swiss-Prot (Human)
Match: SACS (Sacsin OS=Homo sapiens GN=SACS PE=1 SV=2) HSP 1 Score: 248.054 bits (632), Expect = 2.289e-69 Identity = 168/500 (33.60%), Postives = 258/500 (51.60%), Query Frame = 1
Query: 220 VVDEIKAILQQYPDDGQIFKEIIQNAEDARASEIVFVFDKNVDQDADLHFSEEKLRRYQIPSLYAYNNASFTPADWDGVISLGISGKTKQALKVGRFGLGFKSVFHLTDLPCVASDSTFAYLDPMKETF--KEEVEVLDFDEPTDSDADFHD-FKSFQRL-GEKFWRNENG-VEGTLFRLPLRLKASNLSSVIYDEERINALLERFKEEAHTTMIFLKHVKSIKIYTIENGSTVMKEVYSAKLTEHSQEYQSLKVDFVEQINRLVDEEQDFATIKQLRHFXXXXXXXXXXXXXXXXXXXXXXX---XXRYGYEGTNEDFISLMYDEELSYVPLVAIAYPINQDLDEG--------GHVFCTLPLPLHCRKMTGMPVHVNGFFALGQDRKDLKWKSLSTQGSSNDKTVNWNVYLLTELIPIVYSDL-FDFLKTLEIE--------IDVLYKAWPDQNEIDSKWRPILDLFHALMREKDFIYVGFQDTWYKTQNVRFIKTDE 1644
+VD +K IL++YP+ GQI KE+IQNAEDA A+E+ F++D+ Q + + YQ P+LY YNNA FTP DW G+ + S K LKVGRFG+GF SV+H+TD+PC+ S LDP + F E + + + + ++ D F F + G NG GT FR PLRL+ S LSS +Y+++++ L E F+ +A T ++FLK V+ + +Y E T E ++T S E ++LK + I L ++ + + EEE + + C G G + SL +EL +VP++ IA P++ DE G FC LPLP TG+PVH++GFF L +R+ +KW+ L D WN +L+ ++P Y+ L D +K LE+E +DV+YK WP+ +++ W+P+L+ + + + IY D W + + V F + DE
Sbjct: 96 LVDFLKDILRRYPEGGQILKELIQNAEDAGATEVKFLYDET--QYGTETLWSKDMAPYQGPALYVYNNAVFTPEDWHGIQEIARSRKKDDPLKVGRFGIGFNSVYHITDVPCIFSGDQIGMLDPHQTLFGPHESGQCWNLKDDSKEISELSDQFAPFVGIFGSTKETFINGNFPGTFFRFPLRLQPSQLSSNLYNKQKVLELFESFRADADTVLLFLKSVQDVSLYVREADGT---EKLVFRVT--SSESKALKHERPNSIKILGTAISNYCKKTPSNNITCVTYHVNIVLEEESTKDAQKTSWLVCNSVGGRGISSKLDSLA--DELKFVPIIGIAMPLSSRDDEAKGATSDFSGKAFCFLPLPPGEESSTGLPVHISGFFGLTDNRRSIKWRELDQW---RDPAALWNEFLVMNVVPKAYATLILDSIKRLEMEKSSDFPLSVDVIYKLWPEASKVKVHWQPVLEPLFSELLQNAVIYSISCD-WVRLEQVYFSELDE 582 HSP 2 Score: 156.762 bits (395), Expect = 1.494e-39 Identity = 133/451 (29.49%), Postives = 215/451 (47.67%), Query Frame = 1
Query: 154 NVLLVT*RKMYKQKREKFKRRTVVDEIKAILQQYPDDGQIFKEIIQNAEDARASEIVFVFDKNVDQDADLHFSEEKLRRYQIPSLYAYNNASFTPADWDGVISLGISGKTKQALKVGRFGLGFKSVFHLTDLPC-VASDSTFAYLDPMKETFKEEVEVLDFDEPTDSDADFHDFKSFQRLGEKFWRNENGVEG-TLFRLPLR----LKASNLSSVIYDEERINALLERFKEEAHTTMIFLKHVKSIKIYTIENGSTVMKEVYS--AKLTE----HSQEYQSLKVDFVEQINRLVDEEQDFATIKQLRHFXXXXXXXXXXXXXXXXXXXXXXXXXRYGY---EGTNEDFISLMYDEELSYVPLVAIAYPINQDLDEGGHVFCTLPLPLHCRKMTGMPVHVNGFFALGQDRKDLKWKSLSTQGSSNDKTVNWNVYLLTELIPIVYSDLFDFLK 1461
NV T + QK EK R IK+IL YP + ++ KE++QNA+DA+A+EI FVFD D F ++K Q P+L YNN FT D G+ +LG K K G++G+GF SV+H+TD P ++ + DP + D DADF F + + + ++ T+FR PLR K S +SSV + + LL++ + + ++FL H++ I I I+ + + +YS K+T+ +++ + +D V + +L D ++Q+ + + E+ E + + +C R G+ E ++ IS +++++ P +A I + + FC LPL L TG+P HVNG FAL R++L W+ + G +D WN L+T LI Y +L LK
Sbjct: 2512 NVCFTTLGTEFGQK-EKLTSR-----IKSILNAYPSEKEMLKELLQNADDAKATEICFVFDPR-QHPVDRIF-DDKWAPLQGPALCVYNNQPFTEDDVRGIQNLGKGTKEGNPYKTGQYGIGFNSVYHITDCPSFISGNDILCIFDPHARYAPGATSISPGRMFRDLDADFR--TQFSDVLDLYLGTHFKLDNCTMFRFPLRNAEMAKVSEISSVPASDRMVQNLLDKLRSDGAELLMFLNHMEKISICEIDKSTGALNVLYSVKGKITDGDRLKRKQFHASVIDSVTKKRQLKD-----IPVQQITY--------TMDTEDSEGNLTTWLICNRSGFSSMEKVSKSVISAHKNQDITLFPRGGVAACITHNYKKPHRAFCFLPLSLE----TGLPFHVNGHFALDSARRNL-WRDDNGVGVRSD----WNNSLMTALIAPAYVELLIQLK 2930 HSP 3 Score: 110.923 bits (276), Expect = 5.566e-25 Identity = 74/240 (30.83%), Postives = 119/240 (49.58%), Query Frame = 1
Query: 208 KRRTVVDEIKAILQQYPDDGQIFKEIIQNAEDARASEIVFVFDKNVDQDADLHFSEEKLRRYQIPSLYAYNNASFTPADWDGVISLGISGKTKQALKVGRFGLGFKSVFHLTDLPCVASDSTFAYLDPMKETFKEEVEVLDFDEPTDSDADFHDFKSFQRLGEKF--WRNENGVE------------GTLFRLPLRL----KASNLSSVIYDEERINALLERFKEEAHTTMIFLKHVKSI 873
+R + IK IL++YP IFKE++QNA+DA A+E F+ D + D + + + P+L+++NN+ F+ +D+ + LG S K + KVG+FGLGF SV+H+TD+P + S DP + ++ D P K ++ +F + + G + GTLFRL R K S +SS Y+ I +L++ F H +IF + VKS+
Sbjct: 1456 QREPLTVRIKNILEEYPSVSDIFKELLQNADDANATECSFLIDMRRNMDIRENLLDPGMAACHGPALWSFNNSQFSDSDFVNITRLGESLKRGEVDKVGKFGLGFNSVYHITDIPIIMSREFMIMFDPNINHISKHIK--DKSNPGIKINWSKQQKRLRKFPNQFKPFIDVFGCQLPLTVEAPYSYNGTLFRLSFRTQQEAKVSEVSSTCYNTADIYSLVDEFSLCGHRLIIFTQSVKSM 1693 The following BLAST results are available for this feature:
BLAST of TCONS_00055962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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