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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055936 ID=TCONS_00055936|Name=TCONS_00055936|organism=Clytia hemisphaerica|type=transcript|length=2109bpRun BLAST on NCBI protein sequence of TCONS_00055936-protein >TCONS_00055936-protein ID=TCONS_00055936-protein|Name=TCONS_00055936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=581bp MDSSNSINSETQDVDKNFLEAEHFLSNFTTLRDECERLRQESQQLDLRCQRun BLAST on NCBI transcript from alignment at scaffold_266:383484..396662+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00055936 ID=TCONS_00055936|Name=TCONS_00055936|organism=Clytia hemisphaerica|type=transcript|length=13179bp|location=Sequence derived from alignment at scaffold_266:383484..396662+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:383484..396662+ >TCONS_00055936 ID=TCONS_00055936|Name=TCONS_00055936|organism=Clytia hemisphaerica|type=CDS|length=20952bp|location=Sequence derived from alignment at scaffold_266:383484..396662+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00055936 vs. Swiss-Prot (Human)
Match: ZN805 (Zinc finger protein 805 OS=Homo sapiens GN=ZNF805 PE=2 SV=3) HSP 1 Score: 100.908 bits (250), Expect = 4.914e-22 Identity = 51/140 (36.43%), Postives = 73/140 (52.14%), Query Frame = 3
Query: 1410 FRCNLCNVTFSDEEMLARHMKSKHTAKTNICKDCGKAYSTKGSLAQHVHHYHRHPNAYSCKVCGKTFNRKDFLVKHEKTHTNDREFQCKHCDKAFKTNASLSAHVNGSHNETRRFVCDYCGMRTSWRISYLEHMKLHTGE 1829
F+CN C F+ + +LARH + K C +CGK +S L QH H H Y C CGK FNRK L +H++ H+ ++ ++C C KAF ++ H N SH + FVC CG R ++ H +H+GE
Sbjct: 203 FKCNECEKVFNKKRLLARHERIHSGVKPYECTECGKTFSKSTYLLQH-HMVHTGEKPYKCMECGKAFNRKSHLTQHQRIHSGEKPYKCSECGKAFTHRSTFVLH-NRSHTGEKPFVCKECGKAFRDRPGFIRHYIIHSGE 340 HSP 2 Score: 86.2705 bits (212), Expect = 1.735e-17 Identity = 45/140 (32.14%), Postives = 71/140 (50.71%), Query Frame = 3
Query: 1410 FRCNLCNVTFSDEEMLARHMKSKHTAKTNICKDCGKAYSTKGSLAQHVHHYHRHPNAYSCKVCGKTFNRKDFLVKHEKTHTNDREFQCKHCDKAFKTNASLSAHVNGSHNETRRFVCDYCGMRTSWRISYLEHMKLHTGE 1829
++C+ C F+ H +S K +CK+CGKA+ + +H + H N Y C CGK F + +L+ H++THT ++ ++C C KAF +A+L H H + F C CG + R H ++HTGE
Sbjct: 287 YKCSECGKAFTHRSTFVLHNRSHTGEKPFVCKECGKAFRDRPGFIRH-YIIHSGENPYECFECGKVFKHRSYLMWHQQTHTGEKPYECSECGKAFCESAALIHHYV-IHTGEKPFECLECGKAFNHRSYLKRHQRIHTGE 424 HSP 3 Score: 80.8777 bits (198), Expect = 9.139e-16 Identity = 42/140 (30.00%), Postives = 66/140 (47.14%), Query Frame = 3
Query: 1410 FRCNLCNVTFSDEEMLARHMKSKHTAKTNICKDCGKAYSTKGSLAQHVHHYHRHPNAYSCKVCGKTFNRKDFLVKHEKTHTNDREFQCKHCDKAFKTNASLSAHVNGSHNETRRFVCDYCGMRTSWRISYLEHMKLHTGE 1829
F C C F+ L RH + K +C +CGKA++ + H H + CK CGK F+ + L++H HT ++ ++C C KAF + L+ H H+ + + C CG W + + H +HTGE
Sbjct: 399 FECLECGKAFNHRSYLKRHQRIHTGEKPYVCSECGKAFTHCSTFILH-KRAHTGEKPFECKECGKAFSNRADLIRHFSIHTGEKPYECMECGKAFNRRSGLTRHQR-IHSGEKPYECIECGKTFCWSTNLIRHSIIHTGE 536 The following BLAST results are available for this feature:
BLAST of TCONS_00055936 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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