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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055933 ID=TCONS_00055933|Name=TCONS_00055933|organism=Clytia hemisphaerica|type=transcript|length=1733bp AAATGCACGAGGAAAAAAATATCCCATGAGACGAAACCAACCTTCAAGGC ATCTGaTTTAGAGTTTTTCAAAGATGGCTAGCAAAACAATTGAAACCAGT GAAGCGGCAAGTTGcgataaagaaaatttaaatattttatcacGACCCAC TAGAACAAGGAAGCCAGTACTCACAGAAATTCTAAGCTCAAGTGACATCG AACTTAGTCCTCCCTTAAACTATGATGCATTAGAGGAGAATGATGAATAT GATCCCAAAAAAAATGAATCTGACGATGATTCCGATTTGCCTTCTACACC TCTCACAAAGAAAATAACTAAACCAACGAGGGGACGTGGTAGAGGTCGTG GTACAGCATCAACTCGTGGACGTGGGACATCATTGACTTCTGGGCGGGGA GCAGCAAAAGGAAGTGGAACACCAAAAGTAGGACGTGGTAGTCGCAAAAG TNGACTTCTGGGCGGGGAACAGCAAAAGGAAGTGGAACACCAAAAGTAGG ACGTGGTAGTCGCAAAAGTGGAGAATTTTCTACAAAAGCATCTCAAAAAT tattctacaaaaagttgagtGGGCTAGACAACAAAACCTTTGTTAGTTTG ATCAAAGATCTCATAGAAAGTGAGCAAGTCTCAATGACTACAGTTAACAA TAAAATAAACTCCAACATTGATATTGATTCAATTATGAAGGGCTTAGAGA AAGCCAAGAAGGCTATTTTCAAAGCCATGCCAAACCCATGGAGATTTGGA GGAGGAAGTGCTACTTTTCAAAGAAATGATTTTGCACGTAAGCGATGTAC CTCTTCCCAAAGTGCATTCAAAACTTTATTCAGAAATAACACAACCAATT TCAAAGGGTTGGATAATGGTGACCTCATTATTGATTTTGTCTTGAAAGCT TTCCCTGTTGTTTCTGAGCTCCCACAATGGATTGGTTGTTTTAAACCTTT AAGCTTTCTGAATGATTGTCTGGATATGTTAGGTGGTCTACTTATGCAAG CTATTCCAAAGCTCTCAAATGAAAGACTGCAAGATATTGTTGATGAAGTT ACAcgtttctcatcttttacaggTGAAATGGGTGTCTCtgttgaaaatga aaagatgGGAGAGGCTTTAGCTTTACTTAAGTCGAAAATTTGATGCAAAA GACTTACGAAAATGTGTGTATGTATATTATGTACAATTTGTGTTTCATTT CAAAACAGATATATTTGATTCATTATTAggcttttaaacatttttattat atttttaaatgTAGTAATCATATGTGATATATATTCCATTCTATATTTAc tcattttcatcttttacAGGTGAAATGTCATTTAAATTGGCATTATTAGA TTCTAAGATTTGATCGTAaatttaagtttaaaaaaacatgtatattttTT GTGTATAATATTTCAAGAtatatttttaggttttcaaacttttcaaagat ttttaaatgtaaatagtTCACAAGGTGCCTAATTTTATCATTATGTGAGT TAGGTATTTTAGGTCCTCATATATTTATGATAGGAGTATTTTAGTTTTAT TTCAACGTCActattgtttttttcaaaaaagatttataaattagGATTTT TGTTTTCTCTCGCAAAGAAACTCAATTTAGCACTGTAAATGCACATTTAT CAGTAGGACATGTCGTTgccaaaagtcaattttttcgaaaattgagtcAT ATAAagtcatatttagaattttataaattcttg Run BLAST on NCBI protein sequence of TCONS_00055933-protein >TCONS_00055933-protein ID=TCONS_00055933-protein|Name=TCONS_00055933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MTTVNNKINSNIDIDSIMKGLEKAKKAIFKAMPNPWRFGGGSATFQRNDF ARKRCTSSQSAFKTLFRNNTTNFKGLDNGDLIIDFVLKAFPVVSELPQWI GCFKPLSFLNDCLDMLGGLLMQAIPKLSNERLQDIVDEVTRFSSFTGEMG VSVENEKMGEALALLKSKI Run BLAST on NCBI transcript from alignment at scaffold_266:311507..322353+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055933 ID=TCONS_00055933|Name=TCONS_00055933|organism=Clytia hemisphaerica|type=transcript|length=10847bp|location=Sequence derived from alignment at scaffold_266:311507..322353+ (Clytia hemisphaerica) AAATGCACGAGGAAAAAAATATCCCATGAGACGAAACCAACCTTCAAGGC
ATCTGGTAGGTCATGATTTTAAAACAGTTTGCTTCTGTTAAACTCTATTT
TATCagcgattaatttttttaaaggctcTTTTTTAACCTTTCTATTTATT
CTTGAAATAACATCCTTACTTATCATATTTCTCTTATTATACCTACCGCT
GCCCCTGCCCTGGCTGGGTGGCCGCACAAGTTTCGAAAAGTTTCCAGAGA
AAGTGTTTATTCAAGATGTGATGATACTCACACTCACCATACTCACGGTA
TATTATACCTAGGCCAAACCAGAGGCTGGGGAGCTCAAATTTATTGATTC
TGATGAGTAGTGCCaatattcaaataaataaactaGTATATCAGCTAGCA
AAAGGCAAGTATatcagactcaaaatttcagaaaaaaaaagttacacctc
aacatacaaagtttagAGCCTGGTGCAACTAAAACAGTGAACAGTATGGT
ACAGTTTgtgaatgacacagtctgtgtctgcgagtgaacccttgttgacg
cTGGTTGACAcgttaacctgagatcagattgtggttgttttctgccccac
gctgaagctctaaagggatgggtgaaaacatacaatctgacgaatatgca
atctcgaaatcgtaaggactgcgttcgtctaaaaggactaggaatgacaa
caaagttgcgtgattgtgtttatgaatagggcgctgtatcagtttttgac
gttctggcgcacaacaagattctttttttgcaatgtcagcttttccataa
attatgcgcatGCATCGAAAACTATAGAAAATTCTGCTACTGGGTGCGTA
cggaccaattagagacactcaaATATGCAACGCAAGGACAATCCCTGCAG
AGGAGTTAGTTGGTCCAGATTGTAAACCAGAAACATGATcttaaaaaaac
tagacggtgaaatagtttactgtctggatatccaggcaaGCAataggcgg
caaatctctggctgattttttaaaagtatggggccatccacatagtacgt
acgcactaaaatgttgaaaattgagtAGCCCCTCCCCCTGTAGGCAAGTG
TACGCAAATGACTAATTTCGAATTCTAATCGTTTGGTTcagacctttatt
tcatacatgaaattcaatgtttattaagaaactttttccttTCCTTAATA
AGAAGCATAAAAGTTGacataaaagcaagcaaaaaagggctatgaaaatt
tttttctctgcgtacatacattttcctttgacccctcccctccccctgta
cgcaagcatatgcttttgagaagatccccCTCCCCCCTTAGNttttcctt
tgacccctcccctccccctgtacgcaagcatatgcttttgagaagatccc
cctccccccttagcagtcaggacctctttggtcttttttaacattagttc
ggatagaataaaaacatacctgatcaacaaaaccaaaccttctgtcttgc
gtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNTGTTCCAAACCCAAATCCCACCCCCGAAAACAGGCATTTCCC
ACCCCGAAAATGCCCTGTTCCCAGGCCtgggtttttaacattttttcctt
ttaaaagggctatgaaaatttttttctctgcgtacatacattttcctttg
acccctcccctccccctgtacgcaagcatatgcttttgagaagattcccc
tccccccttagtgcgtacatactatgtggacggccctaTGCACGCATGCG
CAGTTAGTTTAAACATGATTAGCACAGTGAGCGTTATCGTAATTATATTG
CAgatattgaattgaattgaatatattttcattgcaacgcagcaggataa
ccccttacaaaaaaaattagattactctaatacaatggggaacctagaag
aaactgaaaaattgttacagacctaaagaaaaataaaccagctgcgctgg
aaggtcagcctaaattgcttaatatgattagaaagatatgttgttaaaaa
ttgatatgatttacTAAGACGAGAGTAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGATATGATTTACTAAGACGAgagtaaaaaaatca
tcaaatttacgtTTGTACACAATATGGATTAACGAAAATATGCCATGTTA
CAATCTGTATGACAGAATGATTATTTGTCTCTTAATTAGGATAGATATTT
AGATATACagatgaacagcaacaaaagactacatcaacaacagattcaag
aaaataaaaatccttgcAAGGAAGTTGGAAGTTAAATGCAAGTacttatc
aaaaatcacaaaaaatttatacacttattattttttactaagCTTAGACT
TACAATTATATTTAAGCTCAAgctggacaaaaaatcaaaaaagtttcaaa
aacaaagatgctgtaaatcagtaaaagttaaaatGGTGTCATTCTTATTC
ATCTTAACTGCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCAAGTtcgagaaaacattatttttgtg
aataatcagataattaagctgtgaactgtaatatatatacactccatcaa
attccagcaattgttggtggttattagtcagccccggtgactcttcaaat
cgtttcgacgatttttttcccgctggtcgtcgtcgtcgtcgttaagactt
tcatttttaattccgatttcggattattttcgggaaacaggatttcggga
ttatttagcgcgcgaaaataattttttcttagcaaGATGAAataagaaaa
gataaaaaacacataacataaaaagaagccttataattaataataagaaa
aaaagaagagaaaaaaaattattttttgcgtcATATCCAATAGTTAATAA
AAGATGctttgcattgtaaataaagagAGCTAATTATAGAGAAAGCATAG
ATGGAGAAAGTGAGtatatatcaaagaaatttttttccttcgaATAATGT
TGAAAGTTATATACTACTTGTAGACTATTTCTTCTATCTGGGTCttttat
tacacgttttttttataaggaataacacgttataaggaactcgaggctga
aaatggtccaaaaaataaggaattgttaaggaactgctcaggctgagaat
aagaaaacaagttttaaggaacagtaacagatggttatccaaacttagca
gctaggtaaataaggaactcaataaggaactttgaggctgaaattctctg
taaaaataaggaactcaaggctcagagcaaagttaaggttccttataaaa
aaacaaacgtgtattCTCATGGAAAGAGTATAACAACAACGGAATAAATC
TTTTTCACCGACTTCTGCTTTGGATACGGATTCCACTATGCACTGCTCTG
TTTTCTTCTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTTTAACAAAGCCAGAT
TTCTTATCTGTACTTCCTATTAATCATTCTAAGCCTTCTAAGCATtttgg
gctgactttccagcgcagctggtttattctatattcaagtccaaaatgaa
aaactatgttttcatgctacaaaaTAATGAGGTCTAGCATAGGTAAAAGA
ATGACtcacaattcaggaaaaaacttgagcaaataagttaaaatcttcat
actttaaagaaaaaaacatcctAATAATCTAACTCCAGTGTTGTATCTTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACA
GATCGGGAGACCAAACTTAACCCGATcggataaaaactttagaaatcgga
ataaaaaaaccaaactcTTAAGCGCCGGCTGGAAaaaagggatttgaagg
gtcatcggggctgaccaaaaaatgaataaacgattatcataatattaata
gtaacaacaataataatgaatataagaaatatttttacttttattttatg
acaatttctttgagtagttttatttgaaaagttcttcctgttacaccACC
CACCCCATCCCACCCCGGGAAAACACACTAGCTTCGCGCACTCACATTCA
CACagaaacacacacacacaaagattattcctcttcagctttgtatttgt
ctaatagaattttgtagctaaagattttagcTCGTTAGTATCaaggttgt
gaaaatcagtgtcaggatgatttattagtaactcattccattgttttgac
aAAAGACAAGACAAGAGAAAGAGTttaagtccaaaatttgtggttttgac
cgttgaaagttttagtagtttaatagctttgcccctggtgccagttttgt
gatcaatttcatcaaaattaagtgtCGATAGGACATCAGACGGAAAATTG
CCTTGgaggtatttttgaataaataagatcaaagattttgagtaGTTTAA
GCTCAGCAAACAGGGGAGTGGCAGAAGTTCTTAGTGCAGTGTTTTGAAGA
GTAAGAATTCTATCTGTGACAGTATTGTCACACAGTCCCCAGAGTTTACT
AGCATAGTGAACacaagaggcaaaaattgcatgataaatgtttagaagga
TGTGAATTGGAACATATTGACGAAGTTTGGATATTGCCCCATCTGCCCTT
CTCAATTTAGCAGCAAGCAGAAAGAAGTATGAACCTTCCAGTTTAGATGA
TTGTCAAGGTGAACACCCAAATACTTCACATTCTTACTTGGTGATAGGAT
TTTCCCGCAAAGCTTAATTCTTGGAATACATTCCATCTGTCTCTAAGGGG
aacgaaaaataacaaactcagTTTTGCTAGCATTCAAGGAAATTTTGTTG
ACATTAAGCCAACTGACTAAGGCTCTGAGATCAGAGATATCTTGCTCCAG
AGCACCGGAAGTGCTCCGGAATCTTCCAGTGTTCTAGAGCACAAAAATGG
CACTTTTTGCTCCGGACGTCTCCAGAGCACCGGAAGGGTCCTACAGGGGT
TCGCTTATTaccagttagggttagggttggagcttgagagtcacaatata
aggccaaaggccttcttaggggcatttgTACCCTGAGACTTAACttgcta
taagtatttgtgaatgacagctgTTTGTCATGTCTCCTTGGCGCAAGTGG
TcaggcattgggtttgtaaaccaaggttgcttgcatttggtggtgtGAGC
TGGGGTCGGAGACCTATTTCACCGATACGGGcgaatttcagaaaaatact
tcaAGAGTCAGAAAATCGGGATaaaagataggaaagtagaaaataggggg
gaAATAggagaggatgcatcctggtggatgatatcttTTGCCaacctcta
taaggagcacaaATCCATTAGCGAATGCCAGCAGTCTATATGATGGCATC
ATTAGGGGTGCTCCTagtgaaaaatgttttgattgtgATTATAAACTTAC
TCTTCATCCCTTTTTAATAAGATGGTAAATCTAAAAAATAGGAATAAGAA
TCCATTTTTTCCAGACCTACTCCCCTTTTCCAAACCTACTTCTTTTGCCC
TTTAATAAAATTGAgattaaaactaaaatattAGATTTTAGCCCACTCTT
GTTTTGGCACTTCAACTCATCTCTAACTTATGCCTAAAAGTTTTCAGGGA
CAGACCAACTCAACTAACATTTAAATTTTGGGTGGTTTTAGATGGTGCTT
AGACTTTGTTATTTTGTAGGACCTGGAAACCTTTGTTGCCTGTGCAATGT
TTGATTAATAAAAGTTTTATTCTTTCAATTGTGACCACTGGCCCGTTACT
TTTCTTTAACCATTGATAAGTTTTGAAGCTAGTTTATCTgtgatcaaatt
taatttttttctcatttagaTTTAGAGTTTTTCAAAGATGGCTAGCAAAA
CAATTGAAACCAGTGAAGCGGCAAGTTGcgataaagaaaatttaaatatt
ttatcacGACCCACTAGAACAAGGAAGCCAGTACTCACAGAAATTCTAAG
CTCAAGTGACATCGAACTTAGTCCTCCCTTAAACTATGATGCATTAGAGG
AGAATGATGAATATGATCCCAAAAAAAATGAATCTGACGATGATTCCGAT
TTGCCTTCTACACCTCTCACAAAGAAAATAACTAAACCAACGAGGGGACG
TGGTAGAGGTCGTGGTACAGCATCAACTCGTGGACGTGGGACATCATTGA
CTTCTGGGCGGGGAGCAGCAAAAGGAAGTGGAACACCAAAAGTAGGACGT
GGTAGTCGCAAAAGTNGACTTCTGGGCGGGGAACAGCAAAAGGAAGTGGA
ACACCAAAAGTAGGACGTGGTAGTCGCAAAAGTGGAGAATTTTCTACAAA
AGCATCTCAAAAATtattctacaaaaagttgagtGGGCTAGACAACAAAA
CCTTTGTTAGTTTGATCAAAGATCTCATAGAAAGTGAGCAAGTCTCAATG
ACTACAGTTAACAATAAAATAAACTCCAACATTGATATTGATTCAATTAT
GAAGGGCTTAGAGAAAGCCAAGAAGGCTATTTTCAAAGCCATGCCAAACC
CATGGAGATTTGGAGGAGGAAGTGCTACTTTTCAAAGAAATGATTTTGCA
CGTAAGCGATGTACCTCTTCCCAAAGTGCATTCAAAACTTTATTCAGAAA
TAACACAACCAATTTCAAAGGGTTGGATAATGGTGACCTCATTATTGATT
TTGTCTTGAAAGCTTTCCCTGTTGTTTCTGAGCTCCCACAATGGATTGGT
TGTTTTAAACCTTTAAGCTTTCTGAATGATTGTCTGGATATGTTAGGTGG
TCTACTTATGCAAGCTATTCCAAAGCTCTCAAATGAAAGACTGCAAGATA
TTGTTGATGAAGTTACAcgtttctcatcttttacaggTGAAATGGGTGTC
TCtgttgaaaatgaaaagatgGGAGAGGCTTTAGCTTTACTTAAGTCGAA
AATTTGATGCAAAAGACTTACGAAAATGTGTGTATGTATATTATGTACAA
TTTGTGTTTCATTTCAAAACAGATATATTTGATTCATTATTAggctttta
aacatttttattatatttttaaatgTAGTAATCATATGTGATATATATTC
CATTCTATATTTActcattttcatcttttacAGGTGAAATGTCATTTAAA
TTGGCATTATTAGATTCTAAGATTTGATCGTAaatttaagtttaaaaaaa
catgtatattttTTGTGTATAATATTTCAAGAtatatttttaggttttca
aacttttcaaagatttttaaatgtaaatagtTCACAAGGTGCCTAATTTT
ATCATTATGTGAGTTAGGTATTTTAGGTCCTCATATATTTATGATAGGAG
TATTTTAGTTTTATTTCAACGTCActattgtttttttcaaaaaagattta
taaattagGATTTTTGTTTTCTCTCGCAAAGAAACTCAATTTAGCACTGT
AAATGCACATTTATCAGTAGGACATGTCGTTgccaaaagtcaattttttc
gaaaattgagtcATATAAagtcatatttagaattttataaattcttg Coding sequence (CDS) from alignment at scaffold_266:311507..322353+ >TCONS_00055933 ID=TCONS_00055933|Name=TCONS_00055933|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_266:311507..322353+ (Clytia hemisphaerica) ATGACTACAGTTAACAATAAAATAAACTCCAACATTGATATTGATTCAAT TATGAAGGGCTTAGAGAAAGCCAAGAAGGCTATTTTCAAAGCCATGCCAA ACCCATGGAGATTTGGAGGAGGAAGTGCTACTTTTCAAAGAAATGATTTT GCACGTAAGCGATGTACCTCTTCCCAAAGTGCATTCAAAACTTTATTCAG AAATAACACAACCAATTTCAAAGGGTTGGATAATGGTGACCTCATTATTG ATTTTGTCTTGAAAGCTTTCCCTGTTGTTTCTGAGCTCCCACAATGGATT GGTTGTTTTAAACCTTTAAGCTTTCTGAATGATTGTCTGGATATGTTAGG TGGTCTACTTATGCAAGCTATTCCAAAGCTCTCAAATGAAAGACTGCAAG ATATTGTTGATGAAGTTACAcgtttctcatcttttacaggTGAAATGGGT GTCTCtgttgaaaatgaaaagatgGGAGAGGCTTTAGCTTTACTTAAGTC GAAAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00055933-exon-scaffold_266-1491911889:311507..311561 | TCONS_00055933-exon-scaffold_266-1491911889:311507..311561 | Clytia hemisphaerica | exon |
TCONS_00055933-exon-scaffold_266-1510915933:311507..311561 | TCONS_00055933-exon-scaffold_266-1510915933:311507..311561 | Clytia hemisphaerica | exon |
TCONS_00055933-exon-scaffold_266-1575043694:311507..311561 | TCONS_00055933-exon-scaffold_266-1575043694:311507..311561 | Clytia hemisphaerica | exon |
TCONS_00055933-exon-scaffold_266-1491911889:320676..322353 | TCONS_00055933-exon-scaffold_266-1491911889:320676..322353 | Clytia hemisphaerica | exon |
TCONS_00055933-exon-scaffold_266-1510915933:320676..322353 | TCONS_00055933-exon-scaffold_266-1510915933:320676..322353 | Clytia hemisphaerica | exon |
TCONS_00055933-exon-scaffold_266-1575043694:320676..322353 | TCONS_00055933-exon-scaffold_266-1575043694:320676..322353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_266 | supercontig | scaffold_266:311507..322353 + |
Blast
The following BLAST results are available for this feature:
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