TCONS_00055871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055871
Unique NameTCONS_00055871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055871 ID=TCONS_00055871|Name=TCONS_00055871|organism=Clytia hemisphaerica|type=transcript|length=1585bp
AGCTATTGTGGACCAAAAAAGTGATAGCGAGCAAAGTGATAGCGAGCAAA
GTGATAGCGAGCAGTCATGTTCAAAAGACGATACGGACGATACAGACACA
GATGCAGATACAGATATAGATCTCTCTGAGCCTTTTTCagaagatgaaga
tgatgagCAAGAAAATATGGATATTGACGAAACTCTACTCAATTCACCTG
ATTTGAGGGATGATGATGAACTTTCTTCAGATGATTCGTTGCCATCTGAG
ATAAGTGACCAAAGCTTGTCAGACGAAGATGTTCCAGTATCTGACGATCT
CCATCATATATTCGAGATGCTTAACCTCGACTGTGAATATGAGGATTGGT
TAGAAGAAACTTACAAAGATGGATTTCTCACGTATGACGAGCCGTCATGT
ATCTTTTTACCTGTAGAAGATTCCGTGCTCAAACAACCAGTTTATCCGGG
CGCTGATTTCACGCTGATGGACGTATTAGCAAATGAACTTATGTGGTTTG
CATCTACCCCGTCGCTGAGTAAAAACGCACTTCAAAAACAGTTAAAGCTT
AAAGCAAAAACCTATCCGAAGGGAAATACCTATCCTGATACACTCCACAA
GGTCTTTGCCCTTGTCGGTCCTTACATGATACCACTAAGGCGGATTGAAC
TTTGCGTAAATGACTGCGTTGCGTTCGAACGCCAATACATATCTTTAAAG
TCGTGTCCTGCCTGTGGTCAAAGTCGGTATTCGTCCAATAATTCAGCAAG
ACGAGTTTTTTTCTACATGTCAATGAAGGATCGCATTAGAAGACTTTTTG
CAAATTATGAAACTTCCAAACTTCTACAAAGTCACGCAGAAGTAAAATTG
CAAAATGTTATTCACGATGTTCACGAAACAAAAAGATGGGTACCGAACAC
AGAAAACCCGAGAAAAGTCAACCTGATTTTGAATACGGATGGTGTAAACC
CGTACAGCATCAGATGCAATTATTCAATGTGGCCAGTTATTTTGGCTATC
GAAAACCTTCCGAGGGCTGTCCGGTTTGATCGTAGTAATCTCTTACTCGG
TGGCATAATTCCTGCATGGAATGACGGGAAAGAAACGCCGAATATCAATA
TATATTCACAGATATTGATCAATGATATTGAGGACTGTCAAGATGCCTTA
ACCTACGATGCATACAGAGGTGATTGGTTCCATTTAGAAGTATCGATAGT
AAAATATGTACTCGATTACCCTGGCATCAACAAATTATTTCACTTATCTG
GATCGGGCGCTTATTCTGGTTGCACATGGTGCGACATCAGAGGTTTATAC
CTGAAAAACTCGAGAAAGATGGTATACATTGGGTATCGGAATTACTTGCC
AGCTGACCATCCATTAAGAAATGACGCAGTATTCCGTTATAAATGCGAAG
AATGTCCGAAATGCTACTCTACAATGGACTACAAGAAATTCGAAGACGAG
TACAATGAAGGAAATGATAAAGAGAGGGTAAAGCTTACCAAAAGGACCGG
ATATCATGGGCCAACTCCATTTAATCAAATGCCAGGGTTCGATTTTGTCA
AACAGATCACGCCGGATCCGATGCACACTCTTACC
Run BLAST on NCBI

transcript from alignment at scaffold_264:65578..68733+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055871 ID=TCONS_00055871|Name=TCONS_00055871|organism=Clytia hemisphaerica|type=transcript|length=3156bp|location=Sequence derived from alignment at scaffold_264:65578..68733+ (Clytia hemisphaerica)
AGCTATTGTGGACCAAAAAAGTGATAGCGAGCAAAGTGATAGCGAGCAAA
GTGATAGCGAGCAGTCATGTTCAAAAGACGATACGGACGATACAGACACA
GATGCAGATACAGATATAGATCTCTCTGAGCCTTTTTCagaagatgaaga
tgatgagCAAGGTTTGTTTGGACTTCAGACTTAGAAAAATTTCACAGTCT
AGCAGGGCAAAAGGTCATTTACCACTTAAAGGGAACAGTTTTTTTctgcg
ggaactaaatttttacggatttccaaattacaaaaggaatttctGCTGTT
TGTGTGAATTATATACCctcaatttttctcatttttaaaaaatctgttCT
TCTCAGAAAATATGGATATTGACGAAACTCTACTCAATTCACCTGATTTG
AGGGATGATGATGAACTTTCTTCAGATGATTCGTTGCCATCTGAGATAAG
TGACCAAAGCTTGTCAGACGAAGATGTTCCAGTATCTGACGATCTCCATC
ATATATTCGAGATGCTTAACCTCGACTGTGAATATGAGGATTGGTTAGAA
GAAACTTACAAAGATGGATTTCTCACGTATGACGGTTCGTATTCTTTTTT
CCTCGGGTACTTAATAAACGGAGGTCTGGAATAAGCGGGGCggataaaaa
aatcttaaactTTCGGCAAAAGGCAATCTCGAAAAATTCCACGGCGGCGA
ATCTTTTTCTTGGGGTTAAAGGTTTTGTAGCATGTCCCAGACGGACACAG
ACACGTCCCTGCACAGAGTGATGAAAGAATGTCGAGAGAAATTTTCTGGG
GTGTAATTCTCAATActaaataattctttttataGAGCCGTCATGTATCT
TTTTACCTGTAGAAGATTCCGTGCTCAAACAACCAGTTTATCCGGGCGCT
GATTTCACGCTGATGGACGTATTAGCAAATGAACTTATGTGGTTTGCATC
TACCCCGTCGCTGAGTAAAAACGCACTTCAAAAACAGTTAAAGCTTAAAG
CAAAAACCTATCCGAAGGGAAATACCTATCCTGATACACTCCACAAGGTC
TTTGCCCTTGTCGGTCCTTACATGATACCACTAAGGCGGATTGAACTTTG
CGTAAATGACTGCGTTGCGTTCGAACGCCAATACATATCTTTAAAGTCGT
GTCCTGCCTGTGGTCAAAGTCGGTATTCGTCCAATAATTCAGCAAGACGA
GTTTTTTTCTACATGTCAATGAAGGATCGCATTAGAAGACTTTTTGCAAA
TTATGAAACTTCCAAACTTCTACAAAGTCACGCAGAAGTAAAGtacgttt
ttttattaatttttaaatatttccttttaggggaaatatttgttaaaaca
ggctttttttcttcttctccttcttcaggTTTCActgctttttgaaattt
ggtgaGTTTTGTACGCTCCTGCattcgatgaaatttgaatcccacttgaa
aattgaattagagagcgtaaAATATCAACAGACTTTTTGCATAGTCTAGG
GATTCGTAATTTTTCAGCTGAGAAGAGGGTTGACGAAATGCCAATGAATA
TAAAAAATCTAAGAACATAAGAACATAGATTTGTCTTACTAGATTGCAAA
ATGTTATTCACGATGTTCACGAAACAAAAAGATGGGTACCGAACACAGAA
AACCCGAGAAAAGTCAACCTGATTTTGAATACGGATGGTGTAAACCCGTA
CAGCATCAGATGCAATTATTCAATGTGGCCAGTTATTTTGGCTATCGAAA
ACCTTCCGAGGGCTGTCCGGTTTGATCGTAGTAATCTCTTACTCGGTGGC
ATAATTCCTGCATGGAATGACGGGAAAGAAACGCCGAATATCAATATATA
TTCACAGATATTGATCAATGATATTGAGGACTGTCAAGATGCCTTAACCT
ACGATGCATACAGGTAAGGTATTTTTTTTTCATGAAATCAGATTATGTCA
ATTAGCTGCGTTCTTTGCGGCTCTGGAGGACCCCCGTCTTTTACGGAATG
TAATCTAAAATGTCTTTTAAACGCTTATTTCGGCCGAATTTAGTGCTTTG
GCCTCTTAGTTCAGCTAAAAAAGGTCGAATCCTTTGCATCGGAATGAGGT
CTAGGACCGCCATCGGGAGTCAGCCCAGTGGGGAGGGGATCAAAATATGC
TGAATTCCCGCTGAGCTAAGGTTCCAGTTACAGCCAGAGACCAAGATTTG
CATTTCACTGCTTTTCAGAGGTGATTGGTTCCATTTAGAAGTATCGATAG
TAAAATATGTACTCGATTACCCTGGCATCAACAAATTATTTCACTTATCT
GGATCGGGCGCTTATTCTGGTTGCACATGGTGCGACATCAGAGGTTAATA
TATTATGATCATTTTGTTGTTTTCATCGTTTCAATAGTTTCGTAGAAACT
ATTAAAAAGGCATTTTTTATTAAATGAAAGTCTGAAGTCGCTCTTTTTGC
ACTTGCTAGTTGTTAGTTGTTTTATTCTTTTCAAGGTTTATACCTGAAAA
ACTCGAGAAAGATGGTATACATTGGGTATCGGAATTACTTGCCAGCTGAC
CATCCATTAAGAAATGACGCAGGTTAATAATccattcatttttttcactt
tttatactGTAGGTAAATTTTCCTTGGGTAGCTAGTTTCGTGAATTGAGA
TTTTGGctgaaaatataataaaactttcgcgaattcaaaaaatttaactt
ttttaaaacaaaaactcgCTAAACACGAAAAGAATTAACAATCAGAGCAA
AAACGGGCGTGTATGTAAATACTTAATCCCTCGCGTTGTCGACCGTATAA
CCCCCTTTTAATTTTAGTATTCCGTTATAAATGCGAAGAATGTCCGAAAT
GCTACTCTACAATGGACTACAAGAAATTCGAAGACGAGTACAATGAAGGA
AATGATAAAGAGAGGGTAAAGCTTACCAAAAGGACCGGATATCATGGGCC
AACTCCATTTAATCAAATGCCAGTAAGAGAAAATAACATCGATTTGATTA
TAATTATTTTACCTTACTTCTACTGTTCAAAGTGGGAGTAGtaatttttc
tacttttcaaCTGTTataataaatattcttatacaaattgtttccacact
aTTAGGGGTTCGATTTTGTCAAACAGATCACGCCGGATCCGATGCACACT
CTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035185XLOC_035185Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055871-exon-scaffold_264-1491911889:65578..65738TCONS_00055871-exon-scaffold_264-1491911889:65578..65738Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1510915933:65578..65738TCONS_00055871-exon-scaffold_264-1510915933:65578..65738Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1575043694:65578..65738TCONS_00055871-exon-scaffold_264-1575043694:65578..65738Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1491911889:65934..66161TCONS_00055871-exon-scaffold_264-1491911889:65934..66161Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1510915933:65934..66161TCONS_00055871-exon-scaffold_264-1510915933:65934..66161Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1575043694:65934..66161TCONS_00055871-exon-scaffold_264-1575043694:65934..66161Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1491911889:66413..66869TCONS_00055871-exon-scaffold_264-1491911889:66413..66869Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1510915933:66413..66869TCONS_00055871-exon-scaffold_264-1510915933:66413..66869Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1575043694:66413..66869TCONS_00055871-exon-scaffold_264-1575043694:66413..66869Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1491911889:67170..67490TCONS_00055871-exon-scaffold_264-1491911889:67170..67490Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1510915933:67170..67490TCONS_00055871-exon-scaffold_264-1510915933:67170..67490Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1575043694:67170..67490TCONS_00055871-exon-scaffold_264-1575043694:67170..67490Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1491911889:67796..67920TCONS_00055871-exon-scaffold_264-1491911889:67796..67920Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1510915933:67796..67920TCONS_00055871-exon-scaffold_264-1510915933:67796..67920Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1575043694:67796..67920TCONS_00055871-exon-scaffold_264-1575043694:67796..67920Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1491911889:68063..68149TCONS_00055871-exon-scaffold_264-1491911889:68063..68149Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1510915933:68063..68149TCONS_00055871-exon-scaffold_264-1510915933:68063..68149Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1575043694:68063..68149TCONS_00055871-exon-scaffold_264-1575043694:68063..68149Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1491911889:68395..68549TCONS_00055871-exon-scaffold_264-1491911889:68395..68549Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1510915933:68395..68549TCONS_00055871-exon-scaffold_264-1510915933:68395..68549Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1575043694:68395..68549TCONS_00055871-exon-scaffold_264-1575043694:68395..68549Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1491911889:68683..68733TCONS_00055871-exon-scaffold_264-1491911889:68683..68733Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1510915933:68683..68733TCONS_00055871-exon-scaffold_264-1510915933:68683..68733Clytia hemisphaericaexon
TCONS_00055871-exon-scaffold_264-1575043694:68683..68733TCONS_00055871-exon-scaffold_264-1575043694:68683..68733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_264supercontigscaffold_264:65578..68733 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.175159	0.142804	0	0	0.608475	0	0	0	0	0	0.168438	0	0.412977	0	0	0.386496	0	0.707766	0	0.00010988	0	0.117201	0	0	0.648475	2.27692e-09	0.0795057	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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