TCONS_00055862 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055862
Unique NameTCONS_00055862
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055862 ID=TCONS_00055862|Name=TCONS_00055862|organism=Clytia hemisphaerica|type=transcript|length=677bp
CAATGAATCTCAGGCATCATTGTCTTATGAGCTGATCGATTGTTGTTTGG
GCTCGACAAGCATCATCTTAAAATTCATGACTGTATTAGAGGAGGAATGG
AAATTATCTTCCTCTGGAGCATTGAACTATGTAAAGTCAATCTCTGATTT
GATGGATTATAGAAAAGCGATGGGGATCAATGATAGCAAATTGCGTTGTT
TTACTATTACAGAAGTTTACTTGAGAAGGGCAAGGGATAATCTAAGGAAG
AAAAAACGTCTTGATAGCacaagaaattttgatttagaaACCCTCATTGG
TCGCGACAGCTGGGCAAGCTTGGAAGAAATGGAGCGGGTTATCCCTTACC
ATATCAATGGCTTCAATCAGGTTGTTGAAAAGTGCAAATCGCAAACACCA
TTACCTAGTAAGCAGGAATTAACATTTTGCACTCGTTTCGTGACAACCta
tctttttttacgtgttaAATGCAGTAGACCCATGACATTTCAATATCTAA
CTCTTCCGATGATCGAAAAGGCAAAGCAGACTGATGGCTTCATTGATCAA
AGAGAATTCAAGACAAGTGGTAAATATCTATTCGACACTTTAATTCTAAC
AGAGGAAGTCTTTACAATTTTGGATAATTACATTGATATTGTCAGACCTC
ACATGAAGCCAGCATGCCACTATCTTC
Run BLAST on NCBI

protein sequence of TCONS_00055862-protein

>TCONS_00055862-protein ID=TCONS_00055862-protein|Name=TCONS_00055862-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
NESQASLSYELIDCCLGSTSIILKFMTVLEEEWKLSSSGALNYVKSISDL
MDYRKAMGINDSKLRCFTITEVYLRRARDNLRKKKRLDSTRNFDLETLIG
RDSWASLEEMERVIPYHINGFNQVVEKCKSQTPLPSKQELTFCTRFVTTY
LFLRVKCSRPMTFQYLTLPMIEKAKQTDGFIDQREFKTSGKYLFDTLILT
EEVFTILDNYIDIVRPHMKPACHYL
Run BLAST on NCBI

transcript from alignment at scaffold_263:165210..165886

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055862 ID=TCONS_00055862|Name=TCONS_00055862|organism=Clytia hemisphaerica|type=transcript|length=677bp|location=Sequence derived from alignment at scaffold_263:165210..165886 (Clytia hemisphaerica)
GAAGATAGTGGCATGCTGGCTTCATGTGAGGTCTGACAATATCAATGTAA
TTATCCAAAATTGTAAAGACTTCCTCTGTTAGAATTAAAGTGTCGAATAG
ATATTTACCACTTGTCTTGAATTCTCTTTGATCAATGAAGCCATCAGTCT
GCTTTGCCTTTTCGATCATCGGAAGAGTTAGATATTGAAATGTCATGGGT
CTACTGCATTtaacacgtaaaaaaagataGGTTGTCACGAAACGAGTGCA
AAATGTTAATTCCTGCTTACTAGGTAATGGTGTTTGCGATTTGCACTTTT
CAACAACCTGATTGAAGCCATTGATATGGTAAGGGATAACCCGCTCCATT
TCTTCCAAGCTTGCCCAGCTGTCGCGACCAATGAGGGTttctaaatcaaa
atttcttgtGCTATCAAGACGTTTTTTCTTCCTTAGATTATCCCTTGCCC
TTCTCAAGTAAACTTCTGTAATAGTAAAACAACGCAATTTGCTATCATTG
ATCCCCATCGCTTTTCTATAATCCATCAAATCAGAGATTGACTTTACATA
GTTCAATGCTCCAGAGGAAGATAATTTCCATTCCTCCTCTAATACAGTCA
TGAATTTTAAGATGATGCTTGTCGAGCCCAAACAACAATCGATCAGCTCA
TAAGACAATGATGCCTGAGATTCATTG

Coding sequence (CDS) from alignment at scaffold_263:165210..165886

>TCONS_00055862 ID=TCONS_00055862|Name=TCONS_00055862|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_263:165210..165886 (Clytia hemisphaerica)
AAGATAGTGGCATGCTGGCTTCATGTGAGGTCTGACAATATCAATGTAAT
TATCCAAAATTGTAAAGACTTCCTCTGTTAGAATTAAAGTGTCGAATAGA
TATTTACCACTTGTCTTGAATTCTCTTTGATCAATGAAGCCATCAGTCTG
CTTTGCCTTTTCGATCATCGGAAGAGTTAGATATTGAAATGTCATGGGTC
TACTGCATTtaacacgtaaaaaaagataGGTTGTCACGAAACGAGTGCAA
AATGTTAATTCCTGCTTACTAGGTAATGGTGTTTGCGATTTGCACTTTTC
AACAACCTGATTGAAGCCATTGATATGGTAAGGGATAACCCGCTCCATTT
CTTCCAAGCTTGCCCAGCTGTCGCGACCAATGAGGGTttctaaatcaaaa
tttcttgtGCTATCAAGACGTTTTTTCTTCCTTAGATTATCCCTTGCCCT
TCTCAAGTAAACTTCTGTAATAGTAAAACAACGCAATTTGCTATCATTGA
TCCCCATCGCTTTTCTATAATCCATCAAATCAGAGATTGACTTTACATAG
TTCAATGCTCCAGAGGAAGATAATTTCCATTCCTCCTCTAATACAGTCAT
GAATTTTAAGATGATGCTTGTCGAGCCCAAACAACAATCGATCAGCTCAT
AAGACAATGATGCCTGAGATTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035176XLOC_035176Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055862-proteinTCONS_00055862-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055862-exon-scaffold_263-1491911889:165210..165886TCONS_00055862-exon-scaffold_263-1491911889:165210..165886Clytia hemisphaericaexon
TCONS_00055862-exon-scaffold_263-1510915933:165210..165886TCONS_00055862-exon-scaffold_263-1510915933:165210..165886Clytia hemisphaericaexon
TCONS_00055862-exon-scaffold_263-1575043694:165210..165886TCONS_00055862-exon-scaffold_263-1575043694:165210..165886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_263supercontigscaffold_263:165210..165886 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.379036	0.295696	0.0858327	0.0839739	0.408921	0.161567	0.48731	0.182486	0.191644	1.02865	0.460817	0.605846	0.0504169	0.837736	0	0	0	0	0	0	0	0.214503	0.086919	0.079022	1.95338	1.23487	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055862 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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