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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055860 ID=TCONS_00055860|Name=TCONS_00055860|organism=Clytia hemisphaerica|type=transcript|length=1028bp
NGGCAGGACGATTCTTGACTTACCAGTCAAAAGCATCATTGGTGTGATGG
GTTTCAAACTTAAGGGATCTCCAATGTTCTCCACGCTCAATGGACGAGAA
TTGATGATGTACTCAGCTTCACAAAGCAATGTTCTCAATGACTCATCGTT
GAATGAACTGCTATGAGTTTGTAAAATTCCATCCAACACAGCTCTAATAC
TTCTAATCTGGCATTCCCAAACGCCCCCAAAATGACTAGAATAAGGAGGA
TTTCTTTCCCAAACAACATAGTCAGCATCAAATTCGTCTCTCAAAAAAGC
TTTAATTTTGTCATGATCAAGACTTTTAAACAACTCCTTCAGCTCACTCT
GAgcaccaacaaaatttgatCCATTATCACTCCTAAGCATTCGAATAGAT
CCACGACGACATATAAACCTTCTTAGACACAAGATAAAAGAATCAGTATT
CATAGAAACCACAGATTCAATATGTGCACTTCGACTTGACAAACAAGTAT
AAATAACTCCCCAACGCTTAACCAATGAGCGACGTTCCTTAACTAAAAAC
GGGCCAAACAAATCCACACCACAAAAACTAAATGGTGGGGCCTCTAAAGT
TCTTTCAAAAGGTAGATCAGACATAATTTGAGAACCAAACTTTCCTCTTA
ACTTTCGACAAAGAAAACAATTCCAAATCACTGACTTAACAAGAGAACAA
AGACTAGTTATCCAAATACCATTTTCACGAATCTCATTCATCGTTACATT
TCTCCCTGCATGGTGAACCTTATCATGATAAAACCTAACAATTACCTTTG
CTATATCAGATTCTCTAGGAATAATAATAGGATACTTAACACATGGGTCA
AGCAGAGATCTACCAAGACGTCCTCCAACACGTAATAAACCATTATCATC
TGTAAAAGGATTCAAACTAGAGATCTTAGAATTTGAAGCAGAAGAAAAAA
AGTACTTAAATTGAAGAAGCTTAAAGATTTTAACTGAAGCTTTAGTCATA
ATATCAACAGACAGAAGGTTACTCATTT Run BLAST on NCBI protein sequence of TCONS_00055860-protein >TCONS_00055860-protein ID=TCONS_00055860-protein|Name=TCONS_00055860-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp
MSNLLSVDIMTKASVKIFKLLQFKYFFSSASNSKISSLNPFTDDNGLLRV
GGRLGRSLLDPCVKYPIIIPRESDIAKVIVRFYHDKVHHAGRNVTMNEIR
ENGIWITSLCSLVKSVIWNCFLCRKLRGKFGSQIMSDLPFERTLEAPPFS
FCGVDLFGPFLVKERRSLVKRWGVIYTCLSSRSAHIESVVSMNTDSFILC
LRRFICRRGSIRMLRSDNGSNFVGAQSELKELFKSLDHDKIKAFLRDEFD
ADYVVWERNPPYSSHFGGVWECQIRSIRAVLDGILQTHSSSFNDESLRTL
LCEAEYIINSRPLSVENIGDPLSLKPITPMMLLTGKSRIVLX Run BLAST on NCBI transcript from alignment at scaffold_263:159606..160633 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055860 ID=TCONS_00055860|Name=TCONS_00055860|organism=Clytia hemisphaerica|type=transcript|length=1028bp|location=Sequence derived from alignment at scaffold_263:159606..160633 (Clytia hemisphaerica)
AAATGAGTAACCTTCTGTCTGTTGATATTATGACTAAAGCTTCAGTTAAA
ATCTTTAAGCTTCTTCAATTTAAGTACTTTTTTTCTTCTGCTTCAAATTC
TAAGATCTCTAGTTTGAATCCTTTTACAGATGATAATGGTTTATTACGTG
TTGGAGGACGTCTTGGTAGATCTCTGCTTGACCCATGTGTTAAGTATCCT
ATTATTATTCCTAGAGAATCTGATATAGCAAAGGTAATTGTTAGGTTTTA
TCATGATAAGGTTCACCATGCAGGGAGAAATGTAACGATGAATGAGATTC
GTGAAAATGGTATTTGGATAACTAGTCTTTGTTCTCTTGTTAAGTCAGTG
ATTTGGAATTGTTTTCTTTGTCGAAAGTTAAGAGGAAAGTTTGGTTCTCA
AATTATGTCTGATCTACCTTTTGAAAGAACTTTAGAGGCCCCACCATTTA
GTTTTTGTGGTGTGGATTTGTTTGGCCCGTTTTTAGTTAAGGAACGTCGC
TCATTGGTTAAGCGTTGGGGAGTTATTTATACTTGTTTGTCAAGTCGAAG
TGCACATATTGAATCTGTGGTTTCTATGAATACTGATTCTTTTATCTTGT
GTCTAAGAAGGTTTATATGTCGTCGTGGATCTATTCGAATGCTTAGGAGT
GATAATGGatcaaattttgttggtgcTCAGAGTGAGCTGAAGGAGTTGTT
TAAAAGTCTTGATCATGACAAAATTAAAGCTTTTTTGAGAGACGAATTTG
ATGCTGACTATGTTGTTTGGGAAAGAAATCCTCCTTATTCTAGTCATTTT
GGGGGCGTTTGGGAATGCCAGATTAGAAGTATTAGAGCTGTGTTGGATGG
AATTTTACAAACTCATAGCAGTTCATTCAACGATGAGTCATTGAGAACAT
TGCTTTGTGAAGCTGAGTACATCATCAATTCTCGTCCATTGAGCGTGGAG
AACATTGGAGATCCCTTAAGTTTGAAACCCATCACACCAATGATGCTTTT
GACTGGTAAGTCAAGAATCGTCCTGCCN Coding sequence (CDS) from alignment at scaffold_263:159606..160633 >TCONS_00055860 ID=TCONS_00055860|Name=TCONS_00055860|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_263:159606..160633 (Clytia hemisphaerica)
ATGAGTAACCTTCTGTCTGTTGATATTATGACTAAAGCTTCAGTTAAAAT
CTTTAAGCTTCTTCAATTTAAGTACTTTTTTTCTTCTGCTTCAAATTCTA
AGATCTCTAGTTTGAATCCTTTTACAGATGATAATGGTTTATTACGTGTT
GGAGGACGTCTTGGTAGATCTCTGCTTGACCCATGTGTTAAGTATCCTAT
TATTATTCCTAGAGAATCTGATATAGCAAAGGTAATTGTTAGGTTTTATC
ATGATAAGGTTCACCATGCAGGGAGAAATGTAACGATGAATGAGATTCGT
GAAAATGGTATTTGGATAACTAGTCTTTGTTCTCTTGTTAAGTCAGTGAT
TTGGAATTGTTTTCTTTGTCGAAAGTTAAGAGGAAAGTTTGGTTCTCAAA
TTATGTCTGATCTACCTTTTGAAAGAACTTTAGAGGCCCCACCATTTAGT
TTTTGTGGTGTGGATTTGTTTGGCCCGTTTTTAGTTAAGGAACGTCGCTC
ATTGGTTAAGCGTTGGGGAGTTATTTATACTTGTTTGTCAAGTCGAAGTG
CACATATTGAATCTGTGGTTTCTATGAATACTGATTCTTTTATCTTGTGT
CTAAGAAGGTTTATATGTCGTCGTGGATCTATTCGAATGCTTAGGAGTGA
TAATGGatcaaattttgttggtgcTCAGAGTGAGCTGAAGGAGTTGTTTA
AAAGTCTTGATCATGACAAAATTAAAGCTTTTTTGAGAGACGAATTTGAT
GCTGACTATGTTGTTTGGGAAAGAAATCCTCCTTATTCTAGTCATTTTGG
GGGCGTTTGGGAATGCCAGATTAGAAGTATTAGAGCTGTGTTGGATGGAA
TTTTACAAACTCATAGCAGTTCATTCAACGATGAGTCATTGAGAACATTG
CTTTGTGAAGCTGAGTACATCATCAATTCTCGTCCATTGAGCGTGGAGAA
CATTGGAGATCCCTTAAGTTTGAAACCCATCACACCAATGATGCTTTTGA
CTGGTAAGTCAAGAATCGTCCTGCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055860-exon-scaffold_263-1491911889:159606..160633 | TCONS_00055860-exon-scaffold_263-1491911889:159606..160633 | Clytia hemisphaerica | exon |
| TCONS_00055860-exon-scaffold_263-1510915933:159606..160633 | TCONS_00055860-exon-scaffold_263-1510915933:159606..160633 | Clytia hemisphaerica | exon |
| TCONS_00055860-exon-scaffold_263-1575043694:159606..160633 | TCONS_00055860-exon-scaffold_263-1575043694:159606..160633 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_263 | supercontig | scaffold_263:159606..160633 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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