TCONS_00055856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055856
Unique NameTCONS_00055856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055856 ID=TCONS_00055856|Name=TCONS_00055856|organism=Clytia hemisphaerica|type=transcript|length=372bp
CCGTCAGATATCGTGTCTTCGTCAGTCGTTGTTTTACCATCAGAGAGATT
AAAACTTTTCGTAATAACGTTCGATTTGTTATTGAcaggaaaaattttct
taacgatTTTCCAAAAGCGGTCTGGGTTATTAGCATTCTCCTTCAGTTCG
TTTTTAAAGTGATTTCTTTTGGCTCGTatgatttcatttttaacaaagTT
CTTTTTTCGACGATAACTTTGCCAATCATAGTTGTTTCGAGACTTTTTAG
CACGTCGGTTTAGCTGGTCGCGAGTATTCATTTGTTTTTTGAGGTCCTCT
GTCATCCAAGGTGATGGTTTACCTTTGATGCGTTTAGTGATGATAGGTGC
ATGGTTGTTAAGTGTTTCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00055856-protein

>TCONS_00055856-protein ID=TCONS_00055856-protein|Name=TCONS_00055856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
KETLNNHAPIITKRIKGKPSPWMTEDLKKQMNTRDQLNRRAKKSRNNYDW
QSYRRKKNFVKNEIIRAKRNHFKNELKENANNPDRFWKIVKKIFPVNNKS
NVITKSFNLSDGKTTTDEDTISD
Run BLAST on NCBI

transcript from alignment at scaffold_263:40291..40662

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055856 ID=TCONS_00055856|Name=TCONS_00055856|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at scaffold_263:40291..40662 (Clytia hemisphaerica)
CAAAGAAACACTTAACAACCATGCACCTATCATCACTAAACGCATCAAAG
GTAAACCATCACCTTGGATGACAGAGGACCTCAAAAAACAAATGAATACT
CGCGACCAGCTAAACCGACGTGCTAAAAAGTCTCGAAACAACTATGATTG
GCAAAGTTATCGTCGAAAAAAGAActttgttaaaaatgaaatcatACGAG
CCAAAAGAAATCACTTTAAAAACGAACTGAAGGAGAATGCTAATAACCCA
GACCGCTTTTGGAAAatcgttaagaaaatttttcctgTCAATAACAAATC
GAACGTTATTACGAAAAGTTTTAATCTCTCTGATGGTAAAACAACGACTG
ACGAAGACACGATATCTGACGG

Coding sequence (CDS) from alignment at scaffold_263:40291..40662

>TCONS_00055856 ID=TCONS_00055856|Name=TCONS_00055856|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_263:40291..40662 (Clytia hemisphaerica)
AAAGAAACACTTAACAACCATGCACCTATCATCACTAAACGCATCAAAGG
TAAACCATCACCTTGGATGACAGAGGACCTCAAAAAACAAATGAATACTC
GCGACCAGCTAAACCGACGTGCTAAAAAGTCTCGAAACAACTATGATTGG
CAAAGTTATCGTCGAAAAAAGAActttgttaaaaatgaaatcatACGAGC
CAAAAGAAATCACTTTAAAAACGAACTGAAGGAGAATGCTAATAACCCAG
ACCGCTTTTGGAAAatcgttaagaaaatttttcctgTCAATAACAAATCG
AACGTTATTACGAAAAGTTTTAATCTCTCTGATGGTAAAACAACGACTGA
CGAAGACACGATATCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035170XLOC_035170Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055856-proteinTCONS_00055856-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055856-exon-scaffold_263-1491911889:40291..40662TCONS_00055856-exon-scaffold_263-1491911889:40291..40662Clytia hemisphaericaexon
TCONS_00055856-exon-scaffold_263-1510915933:40291..40662TCONS_00055856-exon-scaffold_263-1510915933:40291..40662Clytia hemisphaericaexon
TCONS_00055856-exon-scaffold_263-1575043694:40291..40662TCONS_00055856-exon-scaffold_263-1575043694:40291..40662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_263supercontigscaffold_263:40291..40662 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264063	0.283245	0.595833	0	3.70927	2.08749	4.87833	7.94079	4.45351	8.3624	9.88537	3.17356	1.82708	1.05231	1.12532	0.712575	0.163393	0.372765	0	0.291513	0.916774	0.665052	0	0.615518	3.36314	5.8639	2.17703	1.99175	2.00825	2.56234
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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