TCONS_00055852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055852
Unique NameTCONS_00055852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055852 ID=TCONS_00055852|Name=TCONS_00055852|organism=Clytia hemisphaerica|type=transcript|length=295bp
ATAAATCATACGTCAATTACGATAGCAATGGAAAATTACATGTTCATAAT
TCAACATGTTATCAATGCCCCTTTCAAGCTTCTTGTATTAACGGTATCAA
AAGTAGAGGAAACTATTGGGGTTACTCAAACTCCTCTGGATATGTGACAT
TTAAGATATGTCCACCCTTTTATTGTTGTGATCGTTTAAAAAGATGTCAT
TCGTATAACACATGTGCAAACAGGCGTCAAGGGCGGTTGTGTGGAGGGTG
TAGACCTGGAGACTTTATAAGCATATTTAGTCATAACAAATGTGT
Run BLAST on NCBI

transcript from alignment at scaffold_263:917..1211

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055852 ID=TCONS_00055852|Name=TCONS_00055852|organism=Clytia hemisphaerica|type=transcript|length=295bp|location=Sequence derived from alignment at scaffold_263:917..1211 (Clytia hemisphaerica)
ACACATTTGTTATGACTAAATATGCTTATAAAGTCTCCAGGTCTACACCC
TCCACACAACCGCCCTTGACGCCTGTTTGCACATGTGTTATACGAATGAC
ATCTTTTTAAACGATCACAACAATAAAAGGGTGGACATATCTTAAATGTC
ACATATCCAGAGGAGTTTGAGTAACCCCAATAGTTTCCTCTACTTTTGAT
ACCGTTAATACAAGAAGCTTGAAAGGGGCATTGATAACATGTTGAATTAT
GAACATGTAATTTTCCATTGCTATCGTAATTGACGTATGATTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035166XLOC_035166Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055852-exon-scaffold_263-1491911889:917..1211TCONS_00055852-exon-scaffold_263-1491911889:917..1211Clytia hemisphaericaexon
TCONS_00055852-exon-scaffold_263-1510915933:917..1211TCONS_00055852-exon-scaffold_263-1510915933:917..1211Clytia hemisphaericaexon
TCONS_00055852-exon-scaffold_263-1575043694:917..1211TCONS_00055852-exon-scaffold_263-1575043694:917..1211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_263supercontigscaffold_263:917..1211 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05658	0.802639	0.357038	0	0.448427	1.91759	1.28414	1.91593	1.84362	1.27119	1.42031	2.35373	2.93873	3.65433	2.19449	3.91903	2.3917	4.23235	7.71356	4.08138	1.69114	3.52134	2.91488	0	6.66597	7.91061	6.02209	0.436349	2.33715	0.930775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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