TCONS_00055845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055845
Unique NameTCONS_00055845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055845 ID=TCONS_00055845|Name=TCONS_00055845|organism=Clytia hemisphaerica|type=transcript|length=415bp
CAGAAAAGTTCATAAGCTATTTCATAATCAAATTCCTTTGAGATAAACTT
AGCTATTTGAGAAGAAAGAGTAGCAGCAATCAACTCAAAACGAGGCATAA
TGTGATTACTTTTAGCTGGGACAACGCGAGATATACCCATTACCAAAGAA
CAATGAACATAATTATCAGACGTTACGAATCTTAAGTAATGACAACCACT
ATAACCATAATTACAAGCATCAGAAAAGTGGTGTAAACTGATTTCAACAA
TTCGAGTAAAACTTCTTGGCTTAAAGCAACAACTGACACTGAGCACTTGT
AAATTTACTAAAGATTCAACCCATTTATCCCATTGAATGAGATACTCGTT
AGGAACTGGATCATCCCAACCGATTGAAAGCTGACACACTGTCTGAAAGA
TAAGTCTTCCCTTCN
Run BLAST on NCBI

protein sequence of TCONS_00055845-protein

>TCONS_00055845-protein ID=TCONS_00055845-protein|Name=TCONS_00055845-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
KGRLIFQTVCQLSIGWDDPVPNEYLIQWDKWVESLVNLQVLSVSCCFKPR
SFTRIVEISLHHFSDACNYGYSGCHYLRFVTSDNYVHCSLVMGISRVVPA
KSNHIMPRFELIAATLSSQIAKFISKEFDYEIAYELF
Run BLAST on NCBI

transcript from alignment at scaffold_262:44940..45354

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055845 ID=TCONS_00055845|Name=TCONS_00055845|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_262:44940..45354 (Clytia hemisphaerica)
NGAAGGGAAGACTTATCTTTCAGACAGTGTGTCAGCTTTCAATCGGTTGG
GATGATCCAGTTCCTAACGAGTATCTCATTCAATGGGATAAATGGGTTGA
ATCTTTAGTAAATTTACAAGTGCTCAGTGTCAGTTGTTGCTTTAAGCCAA
GAAGTTTTACTCGAATTGTTGAAATCAGTTTACACCACTTTTCTGATGCT
TGTAATTATGGTTATAGTGGTTGTCATTACTTAAGATTCGTAACGTCTGA
TAATTATGTTCATTGTTCTTTGGTAATGGGTATATCTCGCGTTGTCCCAG
CTAAAAGTAATCACATTATGCCTCGTTTTGAGTTGATTGCTGCTACTCTT
TCTTCTCAAATAGCTAAGTTTATCTCAAAGGAATTTGATTATGAAATAGC
TTATGAACTTTTCTG

Coding sequence (CDS) from alignment at scaffold_262:44940..45354

>TCONS_00055845 ID=TCONS_00055845|Name=TCONS_00055845|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_262:44940..45354 (Clytia hemisphaerica)
AAGGGAAGACTTATCTTTCAGACAGTGTGTCAGCTTTCAATCGGTTGGGA
TGATCCAGTTCCTAACGAGTATCTCATTCAATGGGATAAATGGGTTGAAT
CTTTAGTAAATTTACAAGTGCTCAGTGTCAGTTGTTGCTTTAAGCCAAGA
AGTTTTACTCGAATTGTTGAAATCAGTTTACACCACTTTTCTGATGCTTG
TAATTATGGTTATAGTGGTTGTCATTACTTAAGATTCGTAACGTCTGATA
ATTATGTTCATTGTTCTTTGGTAATGGGTATATCTCGCGTTGTCCCAGCT
AAAAGTAATCACATTATGCCTCGTTTTGAGTTGATTGCTGCTACTCTTTC
TTCTCAAATAGCTAAGTTTATCTCAAAGGAATTTGATTATGAAATAGCTT
ATGAACTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035161XLOC_035161Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055845-proteinTCONS_00055845-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055845-exon-scaffold_262-1491911889:44940..45354TCONS_00055845-exon-scaffold_262-1491911889:44940..45354Clytia hemisphaericaexon
TCONS_00055845-exon-scaffold_262-1510915933:44940..45354TCONS_00055845-exon-scaffold_262-1510915933:44940..45354Clytia hemisphaericaexon
TCONS_00055845-exon-scaffold_262-1575043694:44940..45354TCONS_00055845-exon-scaffold_262-1575043694:44940..45354Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_262supercontigscaffold_262:44940..45354 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.53435	1.82417	0.567513	0.997839	0	0.183528	0	0	0.178316	0.179765	0	0.163473	0.113681	0	0.195587	0	0.0423641	0.148326	0	0	0.452934	0	0.0959134	0.517064	0	0	0	0	0.455182	0.377985
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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