TCONS_00055842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055842
Unique NameTCONS_00055842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length912

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055842 ID=TCONS_00055842|Name=TCONS_00055842|organism=Clytia hemisphaerica|type=transcript|length=912bp
GTGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGTCTtgat
tgaTTGATTGTTTCCATTGTTTGTTTCATCGtttccaatgacgtcatcgg
ttccAAATTATTTCCACattcccAACATGACAGCACGCATGAGAAGTTAC
GCCAGTCGTTTTTGACGCCGTTTCTACGAATACGTTATTTATTCATTCCG
TCTCTACATTTCTGTTTGCGTTCAAACATTACTACCTTCATTTTGGCTTG
TTTTAGATGTATTTTTACCACTTCACTAACTTGACTATTATTACGTCAAC
CGTCACTAGTTTCGGTGACGTGTCTATTCTTACGCCCTTACGTTTCCACC
TTATGGATTACCTTGGTTGAATATGAAAAAAACTCATGTCACTATCGGTT
TGGATTGGATCATTTCCCTTGTAAATATCCGACTCTTTTCACTAACTCCG
GTGAAATTTTGTTCAGTCAGTCAGGGACAAAATTCTATATACTATTTTTA
GTGGAAAACCCTGTCAACAGTGGCCTCGGTGAAAATATGAATTTTTCTAA
CCTTTGCTCCCACGACTTTTTTGTACGGTTTAGGTTTGACACCTCCACGG
GTGAGACGATCAAGGTTAAATTATCTAAGTACTGTCAAAGTTGTACGGTC
TTTTTCGGACTCATGGGCGGTAAATATTTGATGGTTTCAATTTGAAATTG
TTCTTCATTTCAAGCCGATGAACATTTTTTGGTATATATACGACAAATAT
TTATATTAATACTtagataagaatattttattgtatagaattaattataa
aaactttgtaatcaattgttgttttttaattgcaaatataatttatttat
ttttatttataaaaaattacaaatcgaCCTTAGGCGACTTAAAGATAAAG
TCTAATTTTTAC
Run BLAST on NCBI

transcript from alignment at scaffold_262:71155..72977-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055842 ID=TCONS_00055842|Name=TCONS_00055842|organism=Clytia hemisphaerica|type=transcript|length=1823bp|location=Sequence derived from alignment at scaffold_262:71155..72977- (Clytia hemisphaerica)
GTGTGATGGTGTTACCAAAGAAATCTTTCGATCGTTTCGTTCGTCTTGGT
AAGAAAAATATCAACTTTTTCACGTTTTTTTAGGGTGGGAATATTTTTAA
ACAATGAATTAATTTTTTTCTATTATTGCGAGAAGTATTGAAATTTTTTT
TAATTTTTTAAATAGAAGTGAAAAGTTTATTTAAAAAGTCTTAGAATTTT
TCAGTCGGATAAATTTTTCCTTTTCGGAGTTCGAATGAATGAAACAGATG
AATTGATTTGGATATTTTAATTGAGATTTTTCATCGCATTTTGGAGCAGA
CATATTTTGGAGACGGTTGAAATTTGCAAATAGAGGGTTGTTTGTGAAAT
GTTTTCTCAGGTTGGATCAGGTCCGGTTAGCGTGGTACACGGGTACAAAC
TATACTTGTGAAAGCTTTTTTTGGCGAAGAAAGAAATTGTCGTTTTTTTT
ATTTTATCGTACAGTACGTCTCTTATGATATTGTTCAAGTGTTTCAAATA
TTTTTCATTCGATATTTATTTTTCAGATTGATTGATTGTTTCCATTGTTT
GTTTCATCGTTTCCAATGACGTCATCGGTTCCAAATTATTTCCACGTAAG
TATATTTAATCATGTATTTGGTTTCCGGCTGATTTGAAATTGCCTAAAGC
CTAAATGTTTCTGCATACCGGAATTTTTTGCAAAAAGTGAATTCATTCAA
AATACTTAGAAAGGAGGGCTTGGTTAGCCTGTACCAAACTCTTCTTGGTG
GACTGAAAAGACCAAGGAAAATTCAATATGATGTACAGTTCAGACTTTCA
TGTGGCTGAGACGAATCCACGCAAGTCTCGGTTGTAAAGAGTTGAACGAT
TTTTAGAATTTAAGCTTCTTTAATTAGTCGATTAAATGCAATTGTTTTTG
TACTCAGTGTTTTAAACTTTTCCACCACATCAGCATTCTCATTAGCCGCT
TCTTAAAAAAACCATTTATTCATATTCGAGTTAACAAGTTTCGTTGTGCA
AATTAACCCTCAATTTTTTTATTTTTAGATTCCCAACATGACAGCACGCA
TGAGAAGTTACGCCAGTCGTTTTTGACGCCGTTTCTACGAATACGTTATT
TATTCATTCCGTCTCTACATTTCTGTTTGCGTTCAAACATTACTACCTTC
ATTTTGGCTTGTTTTAGATGTATTTTTACCACTTCACTAACTTGACTATT
ATTACGTCAACCGTCACTAGTTTCGGTGACGTGTCTATTCTTACGCCCTT
ACGTTTCCACCTTATGGATTACCTTGGTTGAATATGAAAAAAACTCATGT
CACTATCGGTTTGGATTGGATCATTTCCCTTGTAAATATCCGACTCTTTT
CACTAACTCCGGTGAAATTTTGTTCAGTCAGTCAGGGACAAAATTCTATA
TACTATTTTTAGTGGAAAACCCTGTCAACAGTGGCCTCGGTGAAAATATG
AATTTTTCTAACCTTTGCTCCCACGACTTTTTTGTACGGTTTAGGTTTGA
CACCTCCACGGGTGAGACGATCAAGGTTAAATTATCTAAGTACTGTCAAA
GTTGTACGGTCTTTTTCGGACTCATGGGCGGTAAATATTTGATGGTTTCA
ATTTGAAATTGTTCTTCATTTCAAGCCGATGAACATTTTTTGGTATATAT
ACGACAAATATTTATATTAATACTTAGATAAGAATATTTTATTGTATAGA
ATTAATTATAAAAACTTTGTAATCAATTGTTGTTTTTTAATTGCAAATAT
AATTTATTTATTTTTATTTATAAAAAATTACAAATCGACCTTAGGCGACT
TAAAGATAAAGTCTAATTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035158XLOC_035158Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055842-exon-scaffold_262-1575043694:72930..72977TCONS_00055842-exon-scaffold_262-1575043694:72930..72977Clytia hemisphaericaexon
TCONS_00055842-exon-scaffold_262-1575043694:72383..72451TCONS_00055842-exon-scaffold_262-1575043694:72383..72451Clytia hemisphaericaexon
TCONS_00055842-exon-scaffold_262-1575043694:71155..71949TCONS_00055842-exon-scaffold_262-1575043694:71155..71949Clytia hemisphaericaexon
TCONS_00055842-exon-scaffold_262-1510915933:72930..72977TCONS_00055842-exon-scaffold_262-1510915933:72930..72977Clytia hemisphaericaexon
TCONS_00055842-exon-scaffold_262-1510915933:72383..72451TCONS_00055842-exon-scaffold_262-1510915933:72383..72451Clytia hemisphaericaexon
TCONS_00055842-exon-scaffold_262-1510915933:71155..71949TCONS_00055842-exon-scaffold_262-1510915933:71155..71949Clytia hemisphaericaexon
TCONS_00055842-exon-scaffold_262-1491911889:72930..72977TCONS_00055842-exon-scaffold_262-1491911889:72930..72977Clytia hemisphaericaexon
TCONS_00055842-exon-scaffold_262-1491911889:72383..72451TCONS_00055842-exon-scaffold_262-1491911889:72383..72451Clytia hemisphaericaexon
TCONS_00055842-exon-scaffold_262-1491911889:71155..71949TCONS_00055842-exon-scaffold_262-1491911889:71155..71949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_262supercontigscaffold_262:71155..72977 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.460709	0.545943	0.131146	0.331015	1.65198	1.19184	1.8406	1.78568	1.94058	1.04401	1.21154	1.61373	2.5681	1.8817	6.3076	5.62793	3.51227	3.36891	6.35474	5.21516	5.14542	5.79684	2.6662	2.76608	0.287665	0.817648	8.43312	8.42475	11.1873	10.0841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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