TCONS_00055836 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055836
Unique Name	TCONS_00055836
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	587

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_262:11903..17346+

transcript sequence

>TCONS_00055836 ID=TCONS_00055836|Name=TCONS_00055836|organism=Clytia hemisphaerica|type=transcript|length=587bp
GGTGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAACAAG
CCACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGGTCAA
TGGATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAGATC
AAGCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGGTGTTAACA
GAGCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGTACCGGCAA
AAACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGACAAAAGCA
TTACTCTAAACATAATGGATGACGATTTTCAATCGAATGATTATTTCCCC
TCGTGCAAATCACATCTCAAACTCGAAGgcaagCAATCAAATCCGTACAT
CTTTTTCTACAAGTACATTTGCGACAACGGAAAtcatatctcgagatcta
gcaacacatataatacgtataaCTATGATGTCAATGTTGAATACATATTC
AAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGATGGAC
AACTTATGACAACCCAAAACATCACACTCGTCAAAGT

Run BLAST on NCBI

transcript from alignment at scaffold_262:11903..17346+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055836 ID=TCONS_00055836|Name=TCONS_00055836|organism=Clytia hemisphaerica|type=transcript|length=5444bp|location=Sequence derived from alignment at scaffold_262:11903..17346+ (Clytia hemisphaerica)
GGTGTAATGTTGAACAAATTGTTGGTACTTTTTGTGGAGATGATAACAAG
CCACATGATATTTACACTCATTCTAAATGTGCTACCTTAAAATTGGTCAA
TGGATATAAATATGCGAGTTATTTTCGAGTCTTGGCTGAATTCATAGATC
AAGCGTCTATCCCGCACTCTGATTGCTCCTGGTATGAGAGGTAAGATTTA
GCCTACAATGTCATTTTAAAGTTCATGAAATGTCGTAAAAAGTAATTTTA
TGTGCATTTTATTGGGTGGAAATTACTTCCGCACGATAcaggttcttgaa
aaaatccATAAAGAGCGCTAGAAAGATGAAAAGACTTGATGAAAATGAGT
TCctcaaaaatctttaatttgATAAACTCACACAACAAAAATTGTTGGGT
ATTCTTCCAATGTTCTTAAGGTATTCTTCCGATGTTTTTAAGGTATTCTT
TCGATGTTCTTAAGGTATTCTTTCGATGTTCTTAAGGTATTCTTTCGATG
TTCTTAAGGTATTCTTTCGATGTTCTTAAGGTATTCTTTCGATGGTCTTA
AGGTATTCCTTCGATGTTCTTAAGGTATTCTTTCGAtgttcttagggtat
tctttcGGGTAAAAACAGCTCATTGACCTCAATGAGCTATTTTTACCCGA
AAGTAACATCGATTGATATGGCACAATTCTTGTTTATTTACTCTTTAGGG
TGTTAACAGAGCCAAGCGGTGTGATTATTTCACCAGGGTGGCCACACGGT
ACCGGCAAAAACAAAGTGGAATGTAATTGGAGAATTAAAACACAAAATGA
CAAAAGCATTACTCTAAACATAATGGATGACGATTTTCAATCGAATGATT
ATTTCCCCTCGTGCAAATCACATCTCAAACTCGAAGGTTAGTTTCATCTA
GCGTGATCTTTTTGCGTATTTTTCGTTCAACTCAAGGATTGCCGAGTCCT
GATAAATTTTAATTACTTAAggactctgaccatagtccCGGCGGGGAGGG
GAGGTACTTAGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAACCAAAA
ATAGCACTAGTGGACGGCAGGCTTTAGGATTCTTTTGAGGTTTCATTAAT
TTTAAATTACTGAGGTATTTAATCTGTCATACTTTCTTCCCTCAAAAAGT
TCTTTCTGCAGAATTAAAACCAGATTATAAGAAATCTATGGGGTAGACGG
GGGTAGTtgggacagaaatattttagacgatacgcatcccctatatcaaa
tcatatcagaggggatgcgtgcagcctataCAAGTGCTTGAGAAATTGCG
CAATACAGCACGTCGAATCTTTCTGTCATTACTCTGCGATgcaatataaa
aatattgccGAACAAACTGCAAGCGCTTGCAATTTCTCCTTGCAATTTGA
CGTTTTTCtcataaaacatttttatttgtatAATTTCAGACTCTTTCTAA
GGAGGTTACGCTTCAAGAATCTCCAGACGGAAGCAATGAAACAATTGCAA
TGAAGCCGCATTAAAAAAGCTTaaaggttttgattttaaataagagtgat
accgtttgcttactcatcaattttaatttacaagctttttcgcatttttc
gcacacagatgtggagcagaTTGGCaagaaagaggagaagaaaaacattt
ttttgcttatatcagcataacataacaataggaagacactgccccgatat
gaaatatgtgtctgatttGAAACGGGAtcacttatttaaaaacaaaacct
ttaagagacTGAAAACGCTAATCCGAAAGGTTTTGATtaccttaattttt
ttttcaggcaagCAATCAAATCCGTACATCTTTTTCTACAAGTACATTTG
CGACAACGGAAAtcatatctcgagatctagcaacacatataatacgtata
aCTATGATGTCAACGTTGAATACGTATTCAAGAAANTATCTTGAGATCTA
GCAAcacatataatacgtataaCTATGATGTCAATGTTGAATACATATTC
AAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGGGATGGAC
AACTTATGACAACCCAAAACATCACACTCGTCAAAGTAAGATATTTTATT
GTTACAGTGAAGTCCCTGGGAgggtagactagcaagcgtctgtctttctt
TGGACACATGAaagcgggaatagtgcttataatagaGAGTTCTCGTCAAA
GTAAGTATCTTAActaataatacaccttttcgatcgtagccgctaattgc
cacgcgggcattttttgtctgttttaccaccctaaaaccatctttttttc
gcacctaaagacaaaagtgtaaaaaaatgattgggtcgagtttagggtgg
taaattaaataataaagtggcacgcgcctgaccgtgcGACTACATTCGAA
AAGGTGTAATAAACGGGATAAATAACTTTAAACCgttgaatccaaaagtt
ccattaagaatcaaatcgatctgattggttaaaacttaaaaacgatGTCA
TTGACCTAAATGAAATAGTTACTAATCAGAAAAAGCGTTTGATTGTTGAA
GGTAAACCTTTTCATGAATTATGTCAAGAGGAAAACGCTTAcctcctttt
caaaatattacctactacagggtgtcccgaaaaaaattccTGTCTCTGAG
CACGAGGTCAAGTAGAAATTTGTTTTGTGTGTATGTCTAGTTTATCTCTT
TAACGCAACGCAGTAATTAACACTTTAATGGTTACAGTGAAGCAGTAGCA
CAATAAACTTAAGATTAAAATATCAATTGTGTTgttaaataaatcatttt
tatGAACTTTTTATGAACTTCAAACaaagtaaaaacattttaatgatcGC
ATTATATTTAACCACANcctatatcaaatcatatcagaggggatgcgtgc
agcctataCAAGTGCTTGAGAAATTGCGCAATACAGCACGTCGAATCTTT
CTGTCATTACTCTGCGATgcaatataaaaatattgccGAACAAACTGCAA
GCGCTTGCAATTTCTCCTTGCAATTTGACGTTTTTCtcataaaacatttt
tatttgtatAATTTCAGACTCTTTCTAAGGAGGTTACGCTTCAAGAATCT
CCAGACGGAAGCAATGAAACAATTGCAATGAAGCCGCATTAAAAAAGCTT
AAAGGTTTCgattttaaataagagtgataccgtttgcttactcatcaatt
ttaattcacaagctttttcgcatttttcgcacacagatgtggagcagaTT
GGCaagaaagaggagaagaaaaacatttttttgcttatatcagcataaca
taacaataggaagacactgccCCGATATGAAATATTTGTCTGATTTGAAA
CGGGAtcacttatttaaaaacaaaacctttaagagacTGAAAACGCTAAT
CCGAAAGGTTTTGATTACCTTAATTTGTTTTTCAGGCAAGCAATCAAATC
CGTACATCTTTTTCTACAAGTACATTTGCGACAACGGAAATCATATCTTG
AGATCTAGCAAcacatataatacgtataaCTATGATGTCAATGTTGAATA
CATATTCAAGAAGGTCTTTAACAACAAAAACTACAGAGGTTTAGCACTGG
GATGGACAACTTATGACAACCCAAAACATCACACTCGTCAAAGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035155	XLOC_035155	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055836-exon-scaffold_262-1491911889:11903..12092	TCONS_00055836-exon-scaffold_262-1491911889:11903..12092	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1510915933:11903..12092	TCONS_00055836-exon-scaffold_262-1510915933:11903..12092	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1575043694:11903..12092	TCONS_00055836-exon-scaffold_262-1575043694:11903..12092	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1491911889:12601..12788	TCONS_00055836-exon-scaffold_262-1491911889:12601..12788	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1510915933:12601..12788	TCONS_00055836-exon-scaffold_262-1510915933:12601..12788	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1575043694:12601..12788	TCONS_00055836-exon-scaffold_262-1575043694:12601..12788	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1491911889:15510..15588	TCONS_00055836-exon-scaffold_262-1491911889:15510..15588	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1510915933:15510..15588	TCONS_00055836-exon-scaffold_262-1510915933:15510..15588	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1575043694:15510..15588	TCONS_00055836-exon-scaffold_262-1575043694:15510..15588	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1491911889:17217..17346	TCONS_00055836-exon-scaffold_262-1491911889:17217..17346	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1510915933:17217..17346	TCONS_00055836-exon-scaffold_262-1510915933:17217..17346	Clytia hemisphaerica	exon
TCONS_00055836-exon-scaffold_262-1575043694:17217..17346	TCONS_00055836-exon-scaffold_262-1575043694:17217..17346	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_262	supercontig	scaffold_262:11903..17346 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.759424	0	1.68934	2.31583	3.1744	1.88117	7.1291	3.5942	1.21721	0.422093	0.479653	0.389537	0.214013	0.649952	2.54417	2.6147	1.45193	1.18942	2.16504	4.4677	4.94615	4.40679	0.913265	1.85986	0.0520867	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00055836 vs. Swiss-Prot (Human)

BLAST of TCONS_00055836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00055836 (transcript) - C. hemisphaerica