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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055820 ID=TCONS_00055820|Name=TCONS_00055820|organism=Clytia hemisphaerica|type=transcript|length=1410bp
cgaaccagtcgaaccaaatcgaacgcaattataatattttaattacttag
gtaaaatgattgataaaggtgaacattactcgtaattcacaaaaccttat
gtgacaaggatcttgtgtgacaaaattcatccaaaaagacccactagatc
aaaagttaaggggtggtacaggaaaagcccccccccacCCCTAGTTCCTA
GAACCGCcactaaaagcctaggttgaatagggtaaGGACACCCTGAACTT
AAAAATTGGAACACTTTTAATAACTGGTCGTGTACATTTGGGAATCAATA
AgtgtttcgaaaaaaattaattttcttgacattttttttacaGGCTTTAC
GAGACGGCCACGCTAGAGCTGAAAATATCTAAAGAAAGATCGTATTATAG
TGATAGTGACTCGCAATGCCTCATACACCCCGACGGGAAACACATATTCA
GTTTTACTAGCGAAAAACATATTACTTGTTACAGCGTCAATGACTTAGAA
TTAGTCTCACAATTTGAAATCCTTCCACGTAAGTCTAATGATACTGATAG
TGGCGAAGATAATGATGGGAATGGCGCTGACAATGGCGGCGATGACGGTG
CTAATGGCGATACAAACAACAGCGAGGGCGGATGTAATAACGAAGATGGC
GGTAAAATCAATGAGGATGTCGCTGATAATGGCGGGATTGGAGACAAGAA
CAACGGAGATGGCGGTAAAATCAATGATGATGTCGCTGATAATGGCGGGA
ATGAAGACAAAAACAACGGAGATGGCGGTAAAATAAATGATGACGTCGCT
GATAATGGCGGGAACGGAGACAAAAACAACAGAGATGGCGGAGATGGCGG
TGAGGAAACTGAAAATGTTGACgatgatgaagaagatgatGGGAGTATGG
TTGATCTAAGATGCATGACTCTAGACGTTACTGGCAAGAAGTTAATGGTT
GTTGCAGAGGATGGTAATACAGGAAATATTATTAAGATGTTTGATGTGTC
AGATTTGAAAGACTTTAAATTGGAACGAGAAATACCAGTTGAACTTGAAG
AAGTTCAAGGTTGTCATTTGAATAAAGATGCTGATTTAGGCTGTATTTCT
GAGCCTGACTGTATTCAAGTCTACGATTTAACAAGTGGTGAGGGGAAATA
TCAAATTGACCGTGGAAAAGCTATTTGCAAATTCTTCTCGTCAAATAATT
GTCTTTTATACGCTGACGGGAACAATCTCTACAAATACGATCCAGAATCA
GAACAAGACGTCTGTGAATACAAAGGTACAATTTTTTAATCAGTTATCAA
ATTTGGATTCCAATacgccttttcgaccgtagtcgtgcGTCTATCGTGCA
TCTATCCCACTAAACTtgacccaatccttttttgacacatttttctattg
tctataggaa Run BLAST on NCBI protein sequence of TCONS_00055820-protein >TCONS_00055820-protein ID=TCONS_00055820-protein|Name=TCONS_00055820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MVDLRCMTLDVTGKKLMVVAEDGNTGNIIKMFDVSDLKDFKLEREIPVEL
EEVQGCHLNKDADLGCISEPDCIQVYDLTSGEGKYQIDRGKAICKFFSSN
NCLLYADGNNLYKYDPESEQDVCEYKGTIF Run BLAST on NCBI transcript from alignment at scaffold_260:76974..79104+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055820 ID=TCONS_00055820|Name=TCONS_00055820|organism=Clytia hemisphaerica|type=transcript|length=2131bp|location=Sequence derived from alignment at scaffold_260:76974..79104+ (Clytia hemisphaerica)
cgaaccagtcgaaccaaatcgaacgcaattataatattttaattacttag
gtaaaatgattgataaaggtgaacattactcgtaattcacaaaaccttat
gtgacaaggatcttgtgtgacaaaattcatccaaaaagacccactagatc
aaaagttaaggggtggtacaggaaaagcccccccccacCCCTAGTTCCTA
GAACCGCcactaaaagcctaggttgaatagggtaaGGACACCCTGAACTT
AAAAATTGGAACACTTTTAATAACTGGTCGTGTACATTTGGGAATCAATA
AgtgtttcgaaaaaaattaattttcttgacattttttttacaGGCTTTAC
GAGACGGCCACGCTAGAGCTGAAAATATCTAAAGAAAGATCGTATTATAG
TGATAGTGACTCGCAATGCCTCATACACCCCGACGGGAAACACATATTCA
GTTTTACTAGCGAAAAACATATTACTTGTTACAGCGTCAATGACTTAGAA
TTAGTCTCACAATTTGAAATCCTTCCACGTAAGTCTAATGATACTGATAG
TGGCGAAGATAATGATGGGAATGGCGCTGACAATGGCGGCGATGACGGTG
CTAATGGCGATACAAACAACAGCGAGGGCGGATGTAATAACGAAGATGGC
GGTAAAATCAATGAGGATGTCGCTGATAATGGCGGGATTGGAGACAAGAA
CAACGGAGATGGCGGTAAAATCAATGATGATGTCGCTGATAATGGCGGGA
ATGAAGACAAAAACAACGGAGATGGCGGTAAAATAAATGATGACGTCGCT
GATAATGGCGGGAACGGAGACAAAAACAACAGAGATGGCGGAGATGGCGG
TGAGGAAACTGAAAATGTTGACgatgatgaagaagatgatGGGAGTATGG
TTGATCTAAGATGCATGACTCTAGACGTTACTGGCAAGAAGTTAATGGTT
GTTGCAGAGGATGGTAATACAGGAAATATTATTAAGGTAGATGTTTTTTT
CTATATACATAATTTTTATATGCATATGCAGGCTCTGGTTTTGGTACGAA
TGTTATATGTATtcaagtctatttcaaatttgctggcagtgtttttcaaa
cctcaataacttttgatagaatttgaattaagtagcgattttgtgctcgt
tgaaaagacaaacatgAGTGGAATATTGTAATcgtcgaacgaacgaacga
acgaacaaaaaACACTAACTTataggacctcccggtaggtccaaaaataa
aggAGTGAGAGTGTGTAAATAGATTTCGAGCGTACAGTACGTTAACCTTT
TAGTAACCTGAAGATTTCTTTTACAATAGATGTTTGATGTGTCAGATTTG
AAAGACTTTAAATTGGAACGAGAAATACCAGTTGAACTTGAAGAAGTTCA
AGGTTGTCATTTGAATAAAGATGCTGATTTAGGCTGTATTTCTGAGCCTG
ACTGTAAGTATAACAtaaagaaattataaaattgCCAATATTTATCTGGT
GGTCGTTCTATCGAACTTTCTGAGAGGATagtaatgaaaaataaaatctg
tTCTCAGCTCACGGCAGTTTTAGGCTTCCGGCCGTTCAGACAGTGCCTGG
ATTTTCTGAATAGATTTTGTGTATTGCTTCGTAGATTTCGACTGGGTTTT
TAGTTATTCCGTATTCCCTGGAAAAAACATCTACTCTTGACAATCGATCG
GGTGTAGATATTTCAATAGAACAATAGATTGCTAAGACTATAGCTAAATA
GTAGAATTCTCTTCCTCTTTTCTCAAGTTCCTGATGAAACACAGCTCCTG
TTTTTTTATACCAGACTTGTTCTTTTTAAAGGTATTCAAGTCTACGATTT
AACAAGTGGTGAGGGGAAATATCAAATTGACCGTGGAAAAGCTATTTGCA
AATTCTTCTCGTCAAATAATTGTCTTTTATACGCTGACGGGAACAATCTC
TACAAATACGATCCAGAATCAGAACAAGACGTCTGTGAATACAAAGGTAC
AATTTTTTAATCAGTTATCAAATTTGGATTCCAATacgccttttcgaccg
tagtcgtgcGTCTATCGTGCATCTATCCCACTAAACTtgacccaatcctt
ttttgacacatttttctattgtctataggaa Coding sequence (CDS) from alignment at scaffold_260:76974..79104+ >TCONS_00055820 ID=TCONS_00055820|Name=TCONS_00055820|organism=Clytia hemisphaerica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_260:76974..79104+ (Clytia hemisphaerica)
ATGGTTGATCTAAGATGCATGACTCTAGACGTTACTGGCAAGAAGTTAAT
GGTTGTTGCAGAGGATGGTAATACAGGAAATATTATTAAGATGTTTGATG
TGTCAGATTTGAAAGACTTTAAATTGGAACGAGAAATACCAGTTGAACTT
GAAGAAGTTCAAGGTTGTCATTTGAATAAAGATGCTGATTTAGGCTGTAT
TTCTGAGCCTGACTGTATTCAAGTCTACGATTTAACAAGTGGTGAGGGGA
AATATCAAATTGACCGTGGAAAAGCTATTTGCAAATTCTTCTCGTCAAAT
AATTGTCTTTTATACGCTGACGGGAACAATCTCTACAAATACGATCCAGA
ATCAGAACAAGACGTCTGTGAATACAAAGGTACAATTTTTTAAATGGTTG
ATCTAAGATGCATGACTCTAGACGTTACTGGCAAGAAGTTAATGGTTGTT
GCAGAGGATGGTAATACAGGAAATATTATTAAGATGTTTGATGTGTCAGA
TTTGAAAGACTTTAAATTGGAACGAGAAATACCAGTTGAACTTGAAGAAG
TTCAAGGTTGTCATTTGAATAAAGATGCTGATTTAGGCTGTATTTCTGAG
CCTGACTGTATTCAAGTCTACGATTTAACAAGTGGTGAGGGGAAATATCA
AATTGACCGTGGAAAAGCTATTTGCAAATTCTTCTCGTCAAATAATTGTC
TTTTATACGCTGACGGGAACAATCTCTACAAATACGATCCAGAATCAGAA
CAAGACGTCTGTGAATACAAAGGTACAATTTTTTAAATGGTTGATCTAAG
ATGCATGACTCTAGACGTTACTGGCAAGAAGTTAATGGTTGTTGCAGAGG
ATGGTAATACAGGAAATATTATTAAGATGTTTGATGTGTCAGATTTGAAA
GACTTTAAATTGGAACGAGAAATACCAGTTGAACTTGAAGAAGTTCAAGG
TTGTCATTTGAATAAAGATGCTGATTTAGGCTGTATTTCTGAGCCTGACT
GTATTCAAGTCTACGATTTAACAAGTGGTGAGGGGAAATATCAAATTGAC
CGTGGAAAAGCTATTTGCAAATTCTTCTCGTCAAATAATTGTCTTTTATA
CGCTGACGGGAACAATCTCTACAAATACGATCCAGAATCAGAACAAGACG
TCTGTGAATACAAAGGTACAATTTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055820-exon-scaffold_260-1491911889:76974..77959 | TCONS_00055820-exon-scaffold_260-1491911889:76974..77959 | Clytia hemisphaerica | exon |
| TCONS_00055820-exon-scaffold_260-1510915933:76974..77959 | TCONS_00055820-exon-scaffold_260-1510915933:76974..77959 | Clytia hemisphaerica | exon |
| TCONS_00055820-exon-scaffold_260-1575043694:76974..77959 | TCONS_00055820-exon-scaffold_260-1575043694:76974..77959 | Clytia hemisphaerica | exon |
| TCONS_00055820-exon-scaffold_260-1491911889:78303..78426 | TCONS_00055820-exon-scaffold_260-1491911889:78303..78426 | Clytia hemisphaerica | exon |
| TCONS_00055820-exon-scaffold_260-1510915933:78303..78426 | TCONS_00055820-exon-scaffold_260-1510915933:78303..78426 | Clytia hemisphaerica | exon |
| TCONS_00055820-exon-scaffold_260-1575043694:78303..78426 | TCONS_00055820-exon-scaffold_260-1575043694:78303..78426 | Clytia hemisphaerica | exon |
| TCONS_00055820-exon-scaffold_260-1491911889:78805..79104 | TCONS_00055820-exon-scaffold_260-1491911889:78805..79104 | Clytia hemisphaerica | exon |
| TCONS_00055820-exon-scaffold_260-1510915933:78805..79104 | TCONS_00055820-exon-scaffold_260-1510915933:78805..79104 | Clytia hemisphaerica | exon |
| TCONS_00055820-exon-scaffold_260-1575043694:78805..79104 | TCONS_00055820-exon-scaffold_260-1575043694:78805..79104 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_260 | supercontig | scaffold_260:76974..79104 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
| IPR017986 | WD40_repeat_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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