TCONS_00055815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055815
Unique NameTCONS_00055815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055815 ID=TCONS_00055815|Name=TCONS_00055815|organism=Clytia hemisphaerica|type=transcript|length=597bp
GCTTATTTTAAGGTTCTGggattttagctggattttatgacaCGCCTGCA
CGCAAAGTCTTAAAACCTGATCTAGCGACTGACGATTGTAAAATAATATT
CAGGTTGCTAATAAGATTATGCTAAAATGTAAGtataaaaaagtttcagt
ttttCTCAATGAGCTATTGGCAAAAAGGTGCCTGGGTGTTGGAAAACACC
CCTTGATAAAGAATAGGGTAAGTGGCTTTCAAATACagtttatagatttt
tttaagaagATCAATCACGTGCCGTTTCTTTTACATTAGCCTTCATTGTG
AAAGCATCAAAACTTTAAGGAAGTAAAATTAAGACAAAGCAAATTATGAA
GATATTAAAGCAgctgatgaaatattttttaaaacccTCCAAGTTCTTTT
GGGTCTTTATTCTTCCGAGAATTATGAAATAAATTCAACCTTATTCTTGC
TATTTCCAACCACCTCAATTATTTGCTTTCACTGAACTGTTGTATATGGT
TAGGTTTTGAACTttattaaaacataaaaaaatggaGTTATCTCGAAGGT
TTTGGACCGTGGTCTTAATTATAGGAGCTATTTCACACCTTCTTCCT
Run BLAST on NCBI

transcript from alignment at scaffold_26:188257..188853

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055815 ID=TCONS_00055815|Name=TCONS_00055815|organism=Clytia hemisphaerica|type=transcript|length=597bp|location=Sequence derived from alignment at scaffold_26:188257..188853 (Clytia hemisphaerica)
AGGAAGAAGGTGTGAAATAGCTCCTATAATTAAGACCACGGTCCAAAACC
TTCGAGATAACtccatttttttatgttttaataaAGTTCAAAACCTAACC
ATATACAACAGTTCAGTGAAAGCAAATAATTGAGGTGGTTGGAAATAGCA
AGAATAAGGTTGAATTTATTTCATAATTCTCGGAAGAATAAAGACCCAAA
AGAACTTGGAgggttttaaaaaatatttcatcagcTGCTTTAATATCTTC
ATAATTTGCTTTGTCTTAATTTTACTTCCTTAAAGTTTTGATGCTTTCAC
AATGAAGGCTAATGTAAAAGAAACGGCACGTGATTGATcttcttaaaaaa
atctataaactGTATTTGAAAGCCACTTACCCTATTCTTTATCAAGGGGT
GTTTTCCAACACCCAGGCACCTTTTTGCCAATAGCTCATTGAGaaaaact
gaaacttttttataCTTACATTTTAGCATAATCTTATTAGCAACCTGAAT
ATTATTTTACAATCGTCAGTCGCTAGATCAGGTTTTAAGACTTTGCGTGC
AGGCGtgtcataaaatccagctaaaatccCAGAACCTTAAAATAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035140XLOC_035140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055815-exon-scaffold_26-1491911889:188257..188853TCONS_00055815-exon-scaffold_26-1491911889:188257..188853Clytia hemisphaericaexon
TCONS_00055815-exon-scaffold_26-1510915933:188257..188853TCONS_00055815-exon-scaffold_26-1510915933:188257..188853Clytia hemisphaericaexon
TCONS_00055815-exon-scaffold_26-1575043694:188257..188853TCONS_00055815-exon-scaffold_26-1575043694:188257..188853Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:188257..188853 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182875	0.178332	0.931772	0.202576	0.123309	0.19488	0.235115	0	0	0.0954421	0.648469	0.182691	0	0.189462	0	0.278597	0	0	0	0	0	0.129365	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top