TCONS_00055811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055811
Unique NameTCONS_00055811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055811 ID=TCONS_00055811|Name=TCONS_00055811|organism=Clytia hemisphaerica|type=transcript|length=428bp
CAGGTAGTTAACAACTTTCTTGTTGCATTCAATCACAATTTCCAGTCCGT
CCCCGTATTCACGGAACTTCGACTGCAGATCCTTTTTGATTCGTTCGGAT
TTGTTGCCATTAACATTTCTGAAAACTGAAAGACCATCGTCACGGTAGAG
TCCCAAGTTCTTAATGTCGTACGTTTCACTTAATTTATGCTGTAGGTAGA
TTCCAACTAGCTCACAAACTTCAGCGCCGTCAAACGCACCCATGGCCACG
TCAAACAGGTTACCATTTTTCTTCATCCAAGCAGAGTCGTCGCTGGAACA
AAGTGATTTTCGTGCGTGGTTGATAATTTTAACGTCTTTTGCTGACAGAG
TAGTGATGGTTTTGGCGAATTCGAAAGCGTTGGATAGAAGATTTTTAGAG
ATTGACGGATAAAAGTTCTTTATGTCAA
Run BLAST on NCBI

protein sequence of TCONS_00055811-protein

>TCONS_00055811-protein ID=TCONS_00055811-protein|Name=TCONS_00055811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
DIKNFYPSISKNLLSNAFEFAKTITTLSAKDVKIINHARKSLCSSDDSAW
MKKNGNLFDVAMGAFDGAEVCELVGIYLQHKLSETYDIKNLGLYRDDGLS
VFRNVNGNKSERIKKDLQSKFREYGDGLEIVIECNKKVVNYL
Run BLAST on NCBI

transcript from alignment at scaffold_26:121911..122338

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055811 ID=TCONS_00055811|Name=TCONS_00055811|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at scaffold_26:121911..122338 (Clytia hemisphaerica)
TTGACATAAAGAACTTTTATCCGTCAATCTCTAAAAATCTTCTATCCAAC
GCTTTCGAATTCGCCAAAACCATCACTACTCTGTCAGCAAAAGACGTTAA
AATTATCAACCACGCACGAAAATCACTTTGTTCCAGCGACGACTCTGCTT
GGATGAAGAAAAATGGTAACCTGTTTGACGTGGCCATGGGTGCGTTTGAC
GGCGCTGAAGTTTGTGAGCTAGTTGGAATCTACCTACAGCATAAATTAAG
TGAAACGTACGACATTAAGAACTTGGGACTCTACCGTGACGATGGTCTTT
CAGTTTTCAGAAATGTTAATGGCAACAAATCCGAACGAATCAAAAAGGAT
CTGCAGTCGAAGTTCCGTGAATACGGGGACGGACTGGAAATTGTGATTGA
ATGCAACAAGAAAGTTGTTAACTACCTG

Coding sequence (CDS) from alignment at scaffold_26:121911..122338

>TCONS_00055811 ID=TCONS_00055811|Name=TCONS_00055811|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_26:121911..122338 (Clytia hemisphaerica)
GACATAAAGAACTTTTATCCGTCAATCTCTAAAAATCTTCTATCCAACGC
TTTCGAATTCGCCAAAACCATCACTACTCTGTCAGCAAAAGACGTTAAAA
TTATCAACCACGCACGAAAATCACTTTGTTCCAGCGACGACTCTGCTTGG
ATGAAGAAAAATGGTAACCTGTTTGACGTGGCCATGGGTGCGTTTGACGG
CGCTGAAGTTTGTGAGCTAGTTGGAATCTACCTACAGCATAAATTAAGTG
AAACGTACGACATTAAGAACTTGGGACTCTACCGTGACGATGGTCTTTCA
GTTTTCAGAAATGTTAATGGCAACAAATCCGAACGAATCAAAAAGGATCT
GCAGTCGAAGTTCCGTGAATACGGGGACGGACTGGAAATTGTGATTGAAT
GCAACAAGAAAGTTGTTAACTACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035136XLOC_035136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055811-exon-scaffold_26-1491911889:121911..122338TCONS_00055811-exon-scaffold_26-1491911889:121911..122338Clytia hemisphaericaexon
TCONS_00055811-exon-scaffold_26-1510915933:121911..122338TCONS_00055811-exon-scaffold_26-1510915933:121911..122338Clytia hemisphaericaexon
TCONS_00055811-exon-scaffold_26-1575043694:121911..122338TCONS_00055811-exon-scaffold_26-1575043694:121911..122338Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055811-proteinTCONS_00055811-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:121911..122338 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.809994	0.315949	2.93477	1.07671	0.436929	0	0.41655	0.389969	0.546053	0.676375	0.328253	0.863123	0.969663	0.559447	0.459941	0.493588	0.364836	0.872538	2.0665	0.360407	1.09641	0.916781	0.185745	0.168869	0	0.310458	0.666398	1.18533	0.179806	0.91597
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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