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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055804 ID=TCONS_00055804|Name=TCONS_00055804|organism=Clytia hemisphaerica|type=transcript|length=974bp
TACATAATCATAATCACGATCATTTGATAATGCAAGTGCATCCGTGCTCC
CTAAAATGACTGACTTGGCATCGTTGAATGTGAACTCAAATTGAAGCTTT
TCTCTCAAATGATATTGTGAAAACGGAGTGACATCGTTGAGCAACTCGAA
GAAATCAAATGGAATTCTAAACCTTTTCCCCAACGTTTTACCAATAGCCT
GNGTTAAATGTGAACTCAAATTGAAGCTTTTCTCTCAAATGATATTGTGA
AAACGGAGTGACATCGTTGAGCAACTCGAAGAAATCAAATGGAATTCTAA
ACCTTTTCCCCAACGTTTTACCAATAGCCTGCTCCCCTGCATCTCCACTC
GCACCGTTGGATTTAACTCTATGTTTCAATCCATCCTCAGTTTGGATTCC
CTGAAAAACCCGTCgtgctttttccttttttgataaCCACAAGTCCATAT
ATGTCATGATTTCATCGTATTCGTCAATTTCTCTCTCAGGTTTGCCTTCA
AATTTGATCCCTATTTGTTTAATAATTTTTCGACCTAAATTTGGAACTAT
ACTTCTTTTGACGTCTTTCGTGCCACTAATCTCCATGTTACAACTAAGAA
AAGTGCTTCCTGGTACGATCGTGTCATTCTTTCCAAGTTTTGGCATTTCA
ACGATCAGAGTAGACCCAGGTTTGACAGAATTTGGAGTAATCGTGTTTAC
CACGTGTTGACGCTTAAAATGTTGTGCTCGAATGATTCGCGAGCTTCTGT
TTGGATCGATATCCTCTCCATATACAGGATTTACATTATGATCAAAATTA
GCAGGCTGCCTAAAATCTTCGTTGTTATATCTTTCTCTGTTGATATCTTC
ATCAATCATTTTATTTCCGTATCTTGCAAGCATCTTTATTAtaagataaa
aagaaacatGTTTGAACCAACAATTGAAGAAGATATTCCAATGGAAACAA
AAAATAACGATGATGAAGATTATG Run BLAST on NCBI protein sequence of TCONS_00055804-protein >TCONS_00055804-protein ID=TCONS_00055804-protein|Name=TCONS_00055804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=261bp
IIFIIVIFCFHWNIFFNCWFKHVSFYLIIKMLARYGNKMIDEDINRERYN
NEDFRQPANFDHNVNPVYGEDIDPNRSSRIIRAQHFKRQHVVNTITPNSV
KPGSTLIVEMPKLGKNDTIVPGSTFLSCNMEISGTKDVKRSIVPNLGRKI
IKQIGIKFEGKPEREIDEYDEIMTYMDLWLSKKEKARRVFQGIQTEDGLK
HRVKSNGASGDAGEQAIGKTLGKRFRIPFDFFELLNDVTPFSQYHLREKL
QFEFTFNXGYW Run BLAST on NCBI transcript from alignment at scaffold_26:4844..5817 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055804 ID=TCONS_00055804|Name=TCONS_00055804|organism=Clytia hemisphaerica|type=transcript|length=974bp|location=Sequence derived from alignment at scaffold_26:4844..5817 (Clytia hemisphaerica)
CATAATCTTCATCATCGTTATTTTTTGTTTCCATTGGAATATCTTCTTCA
ATTGTTGGTTCAAACatgtttctttttatcttaTAATAAAGATGCTTGCA
AGATACGGAAATAAAATGATTGATGAAGATATCAACAGAGAAAGATATAA
CAACGAAGATTTTAGGCAGCCTGCTAATTTTGATCATAATGTAAATCCTG
TATATGGAGAGGATATCGATCCAAACAGAAGCTCGCGAATCATTCGAGCA
CAACATTTTAAGCGTCAACACGTGGTAAACACGATTACTCCAAATTCTGT
CAAACCTGGGTCTACTCTGATCGTTGAAATGCCAAAACTTGGAAAGAATG
ACACGATCGTACCAGGAAGCACTTTTCTTAGTTGTAACATGGAGATTAGT
GGCACGAAAGACGTCAAAAGAAGTATAGTTCCAAATTTAGGTCGAAAAAT
TATTAAACAAATAGGGATCAAATTTGAAGGCAAACCTGAGAGAGAAATTG
ACGAATACGATGAAATCATGACATATATGGACTTGTGGttatcaaaaaag
gaaaaagcacGACGGGTTTTTCAGGGAATCCAAACTGAGGATGGATTGAA
ACATAGAGTTAAATCCAACGGTGCGAGTGGAGATGCAGGGGAGCAGGCTA
TTGGTAAAACGTTGGGGAAAAGGTTTAGAATTCCATTTGATTTCTTCGAG
TTGCTCAACGATGTCACTCCGTTTTCACAATATCATTTGAGAGAAAAGCT
TCAATTTGAGTTCACATTTAACNCAGGCTATTGGTAAAACGTTGGGGAAA
AGGTTTAGAATTCCATTTGATTTCTTCGAGTTGCTCAACGATGTCACTCC
GTTTTCACAATATCATTTGAGAGAAAAGCTTCAATTTGAGTTCACATTCA
ACGATGCCAAGTCAGTCATTTTAGGGAGCACGGATGCACTTGCATTATCA
AATGATCGTGATTATGATTATGTA Coding sequence (CDS) from alignment at scaffold_26:4844..5817 >TCONS_00055804 ID=TCONS_00055804|Name=TCONS_00055804|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_26:4844..5817 (Clytia hemisphaerica)
ATAATCTTCATCATCGTTATTTTTTGTTTCCATTGGAATATCTTCTTCAA
TTGTTGGTTCAAACatgtttctttttatcttaTAATAAAGATGCTTGCAA
GATACGGAAATAAAATGATTGATGAAGATATCAACAGAGAAAGATATAAC
AACGAAGATTTTAGGCAGCCTGCTAATTTTGATCATAATGTAAATCCTGT
ATATGGAGAGGATATCGATCCAAACAGAAGCTCGCGAATCATTCGAGCAC
AACATTTTAAGCGTCAACACGTGGTAAACACGATTACTCCAAATTCTGTC
AAACCTGGGTCTACTCTGATCGTTGAAATGCCAAAACTTGGAAAGAATGA
CACGATCGTACCAGGAAGCACTTTTCTTAGTTGTAACATGGAGATTAGTG
GCACGAAAGACGTCAAAAGAAGTATAGTTCCAAATTTAGGTCGAAAAATT
ATTAAACAAATAGGGATCAAATTTGAAGGCAAACCTGAGAGAGAAATTGA
CGAATACGATGAAATCATGACATATATGGACTTGTGGttatcaaaaaagg
aaaaagcacGACGGGTTTTTCAGGGAATCCAAACTGAGGATGGATTGAAA
CATAGAGTTAAATCCAACGGTGCGAGTGGAGATGCAGGGGAGCAGGCTAT
TGGTAAAACGTTGGGGAAAAGGTTTAGAATTCCATTTGATTTCTTCGAGT
TGCTCAACGATGTCACTCCGTTTTCACAATATCATTTGAGAGAAAAGCTT
CAATTTGAGTTCACATTTAACNCAGGCTATTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055804-exon-scaffold_26-1491911889:4844..5817 | TCONS_00055804-exon-scaffold_26-1491911889:4844..5817 | Clytia hemisphaerica | exon |
| TCONS_00055804-exon-scaffold_26-1510915933:4844..5817 | TCONS_00055804-exon-scaffold_26-1510915933:4844..5817 | Clytia hemisphaerica | exon |
| TCONS_00055804-exon-scaffold_26-1575043694:4844..5817 | TCONS_00055804-exon-scaffold_26-1575043694:4844..5817 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_26 | supercontig | scaffold_26:4844..5817 . |
Blast
The following BLAST results are available for this feature:
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