TCONS_00055768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055768
Unique NameTCONS_00055768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055768 ID=TCONS_00055768|Name=TCONS_00055768|organism=Clytia hemisphaerica|type=transcript|length=423bp
TACGATTATCCCGAATACTCAGTTGAGAATATCAAAGAGGCTTGCAAACG
TCAATTTAAAGACAATCGACCCTGCGATGTCTTGGTCTGTGATAAAGGAC
CGTCAGCCACACGGATGGACCAATTGCTAAAAACTGACGTTTTTTATGTC
CGCTTTTTAAATGACAAGTTATCATCTTCTTTTCTTAATCCTTCTGCCGT
GGTGAGAAAACGCAAAGCAGCAGCTACTAACAATGAGGatttatcatttt
tcacttCAGTTGCATCAGTTCCACCAGCTCCACCAATGAAACCAAAATCA
CCAAGGACGAAATTGCAACCTGTAGAGTCAACATTCCCAAAAAGCCTTTC
TGCATTGGAAATGATGAACTTTGGGGCTTTgattaaaaagaaatcaaaaa
ctgAGACCATCGAAGTAGAGGAG
Run BLAST on NCBI

protein sequence of TCONS_00055768-protein

>TCONS_00055768-protein ID=TCONS_00055768-protein|Name=TCONS_00055768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
YDYPEYSVENIKEACKRQFKDNRPCDVLVCDKGPSATRMDQLLKTDVFYV
RFLNDKLSSSFLNPSAVVRKRKAAATNNEDLSFFTSVASVPPAPPMKPKS
PRTKLQPVESTFPKSLSALEMMNFGALIKKKSKTETIEVEE
Run BLAST on NCBI

transcript from alignment at scaffold_258:355573..355995

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055768 ID=TCONS_00055768|Name=TCONS_00055768|organism=Clytia hemisphaerica|type=transcript|length=423bp|location=Sequence derived from alignment at scaffold_258:355573..355995 (Clytia hemisphaerica)
CTCCTCTACTTCGATGGTCTcagtttttgatttctttttaatcAAAGCCC
CAAAGTTCATCATTTCCAATGCAGAAAGGCTTTTTGGGAATGTTGACTCT
ACAGGTTGCAATTTCGTCCTTGGTGATTTTGGTTTCATTGGTGGAGCTGG
TGGAACTGATGCAACTGaagtgaaaaatgataaatCCTCATTGTTAGTAG
CTGCTGCTTTGCGTTTTCTCACCACGGCAGAAGGATTAAGAAAAGAAGAT
GATAACTTGTCATTTAAAAAGCGGACATAAAAAACGTCAGTTTTTAGCAA
TTGGTCCATCCGTGTGGCTGACGGTCCTTTATCACAGACCAAGACATCGC
AGGGTCGATTGTCTTTAAATTGACGTTTGCAAGCCTCTTTGATATTCTCA
ACTGAGTATTCGGGATAATCGTA

Coding sequence (CDS) from alignment at scaffold_258:355573..355995

>TCONS_00055768 ID=TCONS_00055768|Name=TCONS_00055768|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_258:355573..355995 (Clytia hemisphaerica)
CTCCTCTACTTCGATGGTCTcagtttttgatttctttttaatcAAAGCCC
CAAAGTTCATCATTTCCAATGCAGAAAGGCTTTTTGGGAATGTTGACTCT
ACAGGTTGCAATTTCGTCCTTGGTGATTTTGGTTTCATTGGTGGAGCTGG
TGGAACTGATGCAACTGaagtgaaaaatgataaatCCTCATTGTTAGTAG
CTGCTGCTTTGCGTTTTCTCACCACGGCAGAAGGATTAAGAAAAGAAGAT
GATAACTTGTCATTTAAAAAGCGGACATAAAAAACGTCAGTTTTTAGCAA
TTGGTCCATCCGTGTGGCTGACGGTCCTTTATCACAGACCAAGACATCGC
AGGGTCGATTGTCTTTAAATTGACGTTTGCAAGCCTCTTTGATATTCTCA
ACTGAGTATTCGGGATAATCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035111XLOC_035111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055768-exon-scaffold_258-1491911889:355573..355995TCONS_00055768-exon-scaffold_258-1491911889:355573..355995Clytia hemisphaericaexon
TCONS_00055768-exon-scaffold_258-1510915933:355573..355995TCONS_00055768-exon-scaffold_258-1510915933:355573..355995Clytia hemisphaericaexon
TCONS_00055768-exon-scaffold_258-1575043694:355573..355995TCONS_00055768-exon-scaffold_258-1575043694:355573..355995Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055768-proteinTCONS_00055768-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:355573..355995 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.509808	0.885662	0.345975	0.367288	0.50989	0.581281	1.83017	2.39448	2.12853	1.03827	1.17573	0.582514	1.69741	1.43279	1.43375	0.88733	0.92083	0.889833	1.05739	0.983927	1.40155	0.703651	0.996764	0.730197	1.42396	2.97008	0.227323	0	0	0.501716
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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