TCONS_00055765 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055765
Unique NameTCONS_00055765
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055765 ID=TCONS_00055765|Name=TCONS_00055765|organism=Clytia hemisphaerica|type=transcript|length=237bp
ctttcgatCAATTCATATACGCCTTTCCAGATATTTTTACTGTTCTTTAT
ATTTGTTTGAAAGTACTTTTTATAATGGTTATTCTTACTTCTTCTGCAGA
GATTAACAATTTGATTTCTGTAGAATTTATATCTGATGTGGAGTTGGTGT
TTAATGGTATTGTCCTTCTCTCGCGTGTAAGCCTTTAAGAGTTGATCTCG
TTTAGCAATAGAGGTTTTAATGCCTTTAGTTATCCAA
Run BLAST on NCBI

transcript from alignment at scaffold_258:286143..286379

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055765 ID=TCONS_00055765|Name=TCONS_00055765|organism=Clytia hemisphaerica|type=transcript|length=237bp|location=Sequence derived from alignment at scaffold_258:286143..286379 (Clytia hemisphaerica)
TTGGATAACTAAAGGCATTAAAACCTCTATTGCTAAACGAGATCAACTCT
TAAAGGCTTACACGCGAGAGAAGGACAATACCATTAAACACCAACTCCAC
ATCAGATATAAATTCTACAGAAATCAAATTGTTAATCTCTGCAGAAGAAG
TAAGAATAACCATTATAAAAAGTACTTTCAAACAAATATAAAGAACAGTA
AAAATATCTGGAAAGGCGTATATGAATTGatcgaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035108XLOC_035108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055765-exon-scaffold_258-1491911889:286143..286379TCONS_00055765-exon-scaffold_258-1491911889:286143..286379Clytia hemisphaericaexon
TCONS_00055765-exon-scaffold_258-1510915933:286143..286379TCONS_00055765-exon-scaffold_258-1510915933:286143..286379Clytia hemisphaericaexon
TCONS_00055765-exon-scaffold_258-1575043694:286143..286379TCONS_00055765-exon-scaffold_258-1575043694:286143..286379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:286143..286379 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.11585	0	0	1.04564	3.81889	6.03548	1.21359	3.40845	0.795445	0.985287	1.91269	0.628663	0	0	0.536004	0.575214	3.54308	2.17893	0	2.10005	1.39408	1.33549	1.08231	1.96795	11.1482	6.3315	0	0	0.241753	1.06745
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055765 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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