TCONS_00055761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055761
Unique NameTCONS_00055761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055761 ID=TCONS_00055761|Name=TCONS_00055761|organism=Clytia hemisphaerica|type=transcript|length=454bp
AAAGACCTTATACATAATATATAATTGCAGTTTATCCCTCTAAATACTAT
AAATTGCAGTTTATCTAtcaatctatctatctatctatctatatatttgg
TACTAAGAGGCCCTAAGGCCCATTATCCGTACAATGTTAAGTCCCGccac
ttttcttctttttcaataaaGTTAGCAGCTTTCGTGAGACTCCTTGGATT
GGCAAActtgaagaaattgaagaaaaactaaaaatcatTCACCCCTGGAA
ATAAAACTtagattattttattttgttccaTCACAAACGCTCATGAAAGC
gtcaaatattttattacagtatCCAATCACGGTCATATCGATTGTTATAT
ACAAGTGTCTGCGtggcaatagaccttttttcaaagaggacgtcctgttg
aataattatgtagtccagccataaaaacaatgatagagccatgcataatt
actg
Run BLAST on NCBI

transcript from alignment at scaffold_258:269611..270064

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055761 ID=TCONS_00055761|Name=TCONS_00055761|organism=Clytia hemisphaerica|type=transcript|length=454bp|location=Sequence derived from alignment at scaffold_258:269611..270064 (Clytia hemisphaerica)
cagtaattatgcatggctctatcattgtttttatggctggactacataat
tattcaacaggacgtcctctttgaaaaaaggtctattgccaCGCAGACAC
TTGTATATAACAATCGATATGACCGTGATTGGatactgtaataaaatatt
tgacGCTTTCATGAGCGTTTGTGAtggaacaaaataaaataatctaAGTT
TTATTTCCAGGGGTGAatgatttttagtttttcttcaatttcttcaagTT
TGCCAATCCAAGGAGTCTCACGAAAGCTGCTAACtttattgaaaaagaag
aaaagtggCGGGACTTAACATTGTACGGATAATGGGCCTTAGGGCCTCTT
AGTAccaaatatatagatagatagatagatagattgaTAGATAAACTGCA
ATTTATAGTATTTAGAGGGATAAACTGCAATTATATATTATGTATAAGGT
CTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035104XLOC_035104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055761-exon-scaffold_258-1491911889:269611..270064TCONS_00055761-exon-scaffold_258-1491911889:269611..270064Clytia hemisphaericaexon
TCONS_00055761-exon-scaffold_258-1510915933:269611..270064TCONS_00055761-exon-scaffold_258-1510915933:269611..270064Clytia hemisphaericaexon
TCONS_00055761-exon-scaffold_258-1575043694:269611..270064TCONS_00055761-exon-scaffold_258-1575043694:269611..270064Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:269611..270064 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.937533	0.575893	0.520375	0.387608	1.22121	0.68464	1.37734	1.1308	1.19659	1.01348	0.807682	0.879094	2.49854	1.32087	0.435073	0.394373	0	0.900341	0.228449	1.07926	0.428376	0.95548	0.224081	0.366569	4.68842	3.17498	1.38721	0	0.666375	1.01939
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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