TCONS_00055757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055757
Unique NameTCONS_00055757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055757 ID=TCONS_00055757|Name=TCONS_00055757|organism=Clytia hemisphaerica|type=transcript|length=264bp
CAGGTGCCTCTAACAGCTGAGGTCGAAGAGATCGCAAAATACTCTAAGTG
CTCATTTGCATTTGATCTCGGCTTTTGGTTCATAAAGGAatgaagtttta
tttaatttttgaaaagataaggCAACTTTCCCGGGTTTTCTCGGTCTTGG
CATCTGAGTTTCTTAGAATGTGGAGCTTGATCTAAAGCCTTAGGGTTAGC
GGGCCTGCAAGTAACTTGCTTGACTGGGGGTGAACGCAGGTGCCTCTAAA
AGCTGAGGTCTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_258:248699..248962

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055757 ID=TCONS_00055757|Name=TCONS_00055757|organism=Clytia hemisphaerica|type=transcript|length=264bp|location=Sequence derived from alignment at scaffold_258:248699..248962 (Clytia hemisphaerica)
CTTAGACCTCAGCTTTTAGAGGCACCTGCGTTCACCCCCAGTCAAGCAAG
TTACTTGCAGGCCCGCTAACCCTAAGGCTTTAGATCAAGCTCCACATTCT
AAGAAACTCAGATGCCAAGACCGAGAAAACCCGGGAAAGTTGccttatct
tttcaaaaattaaataaaacttcatTCCTTTATGAACCAAAAGCCGAGAT
CAAATGCAAATGAGCACTTAGAGTATTTTGCGATCTCTTCGACCTCAGCT
GTTAGAGGCACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035100XLOC_035100Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055757-exon-scaffold_258-1491911889:248699..248962TCONS_00055757-exon-scaffold_258-1491911889:248699..248962Clytia hemisphaericaexon
TCONS_00055757-exon-scaffold_258-1510915933:248699..248962TCONS_00055757-exon-scaffold_258-1510915933:248699..248962Clytia hemisphaericaexon
TCONS_00055757-exon-scaffold_258-1575043694:248699..248962TCONS_00055757-exon-scaffold_258-1575043694:248699..248962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_258supercontigscaffold_258:248699..248962 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.31776	1.58982	2.23256	1.56306	0.645369	0	1.64711	2.46723	1.70816	0.351086	0.753538	0.464148	0.475737	0	0	3.58679	1.74951	0	0	0.663831	0.592454	0.847799	1.80959	0.686254	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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